YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220942712, gi...
Organism:	synthetic construct
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220942712, gi....

Description	E-value	Query Range	Subject Range
AGAP005410-PA, A... - peptide alpha-N-acetyltransferase\|protein_coding\|2L:15212632:15213249:1\|gene:AGAP005410, peptide alp... gi\|158294143, gi... - gi\|58387237\|ref\|XP_315418.2\| ENSANGP00000007006 [Anopheles gambiae str. PEST], gi\|55238224\|gb\|EAA113...	165.0	[0..1]	[196..1]
gi\|74222805 - gi\|74222805\|dbj\|BAE42263.1\| unnamed protein product [Mus musculus]	154.0	[0..1]	[192..1]
gi\|89271283, gi\|... - gi\|89272729\|emb\|CAJ83169.1\| ARD1 homolog A, N-acetyltransferase (S. cerevisiae) [Xenopus tropicalis]...	153.0	[0..1]	[196..1]
gi\|147901790, gi... - gi\|28422354\|gb\|AAH44094.1\| Ard1-prov protein [Xenopus laevis], gi\|147901790\|ref\|NP_001080491.1\| N-ac...	150.0	[0..1]	[196..1]
gi\|114594037 - gi\|114594037\|ref\|XP_526574.2\| PREDICTED: glycerol kinase 2 [Pan troglodytes]	145.0	[0..1]	[188..690]
gi\|182890674, gi... - gi\|47086985\|ref\|NP_998499.1\| alpha-N-acetyltransferase 1A [Danio rerio], gi\|31419462\|gb\|AAH53180.1\| ...	145.0	[0..1]	[192..1]
gi\|51593357 - gi\|51593357\|gb\|AAH80651.1\| ARD1B protein [Homo sapiens]	145.0	[0..1]	[188..45]
gi\|157114153, gi... - gi\|94468972\|gb\|ABF18335.1\| major N alpha-acetyltransferase subunit [Aedes aegypti], gi\|157114153\|ref...	144.0	[0..1]	[196..1]

Back

Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIRCAKPED LMTMQHCNLL CLPENYQMKY YFYHGLTWPQ LSYVAVDDKG AIVGYVLAKM  60
   61 EEPEPNEESR HGHITSLAVK RSYRRLGLAQ KLMNQASQAM VECFNAQYVS LHVRKSNRAA 120
  121 LNLYTNALKF KIIEVEPKYY ADGEDAYAMR RDLSEFADED QAKAAKQSGE EEEKAVHRSG 180
  181 GHGHSHNHSG HDGHCC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1yr0A
Description:	Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
N-acetyltransferase activity	6.09290029352595	bayes_pls_golite062009
N-acyltransferase activity	6.08913516066746	bayes_pls_golite062009
acetyltransferase activity	5.86411968036951	bayes_pls_golite062009
histone acetyltransferase activity	5.85159161781386	bayes_pls_golite062009
lysine N-acetyltransferase activity	5.85159161781386	bayes_pls_golite062009
acyltransferase activity	4.72881921515185	bayes_pls_golite062009
transferase activity, transferring acyl groups	4.70793039001114	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	4.69837915971204	bayes_pls_golite062009
transferase activity	3.5778020729894	bayes_pls_golite062009
myristoyltransferase activity	3.50779447340192	bayes_pls_golite062009
glycylpeptide N-tetradecanoyltransferase activity	3.50779447340192	bayes_pls_golite062009
	3.29707445389818	bayes_pls_golite062009
catalytic activity	1.97933499002461	bayes_pls_golite062009
binding	1.07749536895426	bayes_pls_golite062009
nucleic acid binding	0.522132859536345	bayes_pls_golite062009
protein binding	0.098756769132141	bayes_pls_golite062009
transcription regulator activity	0.0766125702622449	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: