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View Structure Prediction Details

Protein: gi|190407167
Organism: Saccharomyces cerevisiae RM11-1a
Length: 910 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190407167.

Description E-value Query
Range
Subject
Range
gi|190407167 - gi|190407167|gb|EDV10434.1| exocyst complex component SEC15 [Saccharomyces cerevisiae RM11-1a]
SEC15_YEAST - Exocyst complex component SEC15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC15 PE...
SEC15 - Essential 113kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p,...
0.0 [1..910] [1..910]
gi|9507077, gi|7... - gi|9507077|ref|NP_062150.1| SEC15-like 1 [Rattus norvegicus], gi|7513970|pir||T09221 exocyst complex...
0.0 [30..884] [33..806]
gi|4589470 - gi|4589470|dbj|BAA76763.1| KIAA0919 protein [Homo sapiens]
0.0 [21..724] [32..700]
sec15-PA - The gene sec15 is referred to in FlyBase by the symbol Dmel\sec15 (CG7034, FBgn0038856). It is a pro...
0.0 [62..884] [14..753]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [41..884] [29..766]
EXOC6_ARATH, SC1... - (Q9LXX6) Probable exocyst complex component Sec15, Probable exocyst complex component 6 OS=Arabidops...
0.0 [62..878] [30..767]
SEC15_SCHPO - Exocyst complex component sec15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec15 PE=2...
sec15 - exocyst complex subunit Sec15
0.0 [47..868] [8..743]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQEGQPLLS KDFQQVLLAT ASGNNSSWTE RAVLNNESTD AVKHEPALGQ NDVFDLDPLS  60
   61 FDKWVPFLRR ALDKNQ

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.11
Match: 1ddbA
Description: Proapoptotic molecule Bid
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [77-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDPVIDELEN SIEDNFQGLE LQLLQDSQMN DKLETSIDEI ANIQGMVQDT LSSEISKFQI  60
   61 RLSESANELI VKKQMYVNNK KISLKISEAT ILITKVVRIL ELSSKCQELI TERKFFKVLQ 120
  121 NLDSLEKLYL QEFKNYNFQF LIEIYNSIPF LQKVTKDECI NLIRNSLNLN LGKNLIKVGQ 180
  181 EFVAIYENEL LPQWLETRSK MKLTNFKFNS PIEIS

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.45
Match: 1av1A
Description: Apolipoprotein A-I
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [292-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDESFLAKL NLGEFFQLDD FHDSIMIFQN LNELSVLSGE FNKEYELRKT KLMYPLIWKK  60
   61 NKTAAYQMDS LLRGTGTTPG STAHDVST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [380-550]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDPFTQSLSL HFLQDYFLKI LGFLLYDINL NKATEFILVD NNYNSTNEFW DGLMDRLSPY  60
   61 LSYFIDEKLK TEEDMIKLKD FLCIYVAILE NFKLNIEPLY KILVSIFEKF CSVSLRAFDD 120
  121 EFQILLNDDD FMPLSINDKT LYEKVLKICW MKEGEHLSLP DPTNGEPFAV T

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [624-667]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLDYFIIAAK EFSNFMTREN ILQNPDMEIR LSSIKYLAES RKLA

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [721-730]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPYSVQTLLI 

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.65
Match: 1b8fA
Description: Histidine ammonia-lyase (HAL)
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [551-623]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPFSPLYPMT CTLAKKTYSK ITAFLSIFYR HELHTLNNIL VKTMDDIFND IVNKKIRSKL  60
   61 ESTSREEIAQ ILV

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [668-720]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETKLIELIDS KISDILETIE IDWQITEVRQ DPDISIIDLA QFLEMMFAST LQN

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [731-775]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FREFDSLTRQ FMGLLLHDTP STITHESIMN FEVDVNYLES IIPRI

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.65
Match: 1b8fA
Description: Histidine ammonia-lyase (HAL)
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [776-910]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPSTPGTIDS NGYQSPMTPS TPTFPNANGV DAPTLFENNI KSLEATFMEL KQCIELLKTQ  60
   61 GKDYNEPEIR LRKYSRIRQE DAALLLSKIQ HFVSSVEGAN GDDTSVMDSS SIFNSESASV 120
  121 IDSNTSRIAK FFNRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle