YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214000935
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214000935.

Description	E-value	Query Range	Subject Range
gi\|75430394, gi\|... - gi\|75430394\|ref\|ZP_00732755.1\| conserved hypothetical protein HI1333 [Actinobacillus succinogenes 13...	7.0E-31	[14..110]	[1..97]
gi\|23467071, gi\|... - gi\|23467071\|ref\|ZP_00122656.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly...	1.0E-29	[14..110]	[1..97]
gi\|52425017, gi\|... - gi\|52425017\|ref\|YP_088154.1\| hypothetical protein MS0962 [Mannheimia succiniciproducens MBEL55E], gi...	1.0E-29	[12..110]	[35..133]
CAF1P_ARATH - CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=2 SV=2	1.0E-29	[3..110]	[230..337]
gi\|15602578, gi\|... - gi\|15602578\|ref\|NP_245650.1\| hypothetical protein PM0713 [Pasteurella multocida subsp. multocida str...	1.0E-29	[12..110]	[1..99]
gi\|34105105, gi\|... - gi\|34499254\|ref\|NP_903469.1\| hypothetical protein CV_3799 [Chromobacterium violaceum ATCC 12472], gi...	2.0E-29	[4..110]	[47..153]
gi\|168825857, gi... - gi\|32029182\|ref\|ZP_00132246.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly...	4.0E-29	[14..110]	[1..97]
CAF2P_ORYSJ - CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=3 SV=1	6.0E-29	[6..110]	[220..324]
CAF2P_MAIZE - CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1	8.0E-29	[6..110]	[224..328]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRFQSQRKQ KYTMNLSTKQ KQHLKGLAHP LKPVVMLGNN GLTEGVLAEI EQALEHHELI  60
   61 KVKIASEDRE TKTLIVDAIV RETGACNVQV IGKTLVLYRP TKERKISLPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1jo0A
Description:	YhbY homologue HI1333
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits