YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|204929109, gi...
Organism:	Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
Length:	304 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|204929109, gi....

Description	E-value	Query Range	Subject Range
gi\|117624506, gi... - gi\|117624506\|ref\|YP_853419.1\| acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Esche... gi\|187771256, gi... - gi\|187775757\|ref\|ZP_02797960.2\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|188017314, gi... - gi\|188024699\|ref\|ZP_02773192.2\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|189404953, gi... - gi\|189404953\|ref\|ZP_02812235.2\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|227835726, gi... - gi\|227887376\|ref\|ZP_04005181.1\| acetyl-CoA carboxylase [Escherichia coli 83972], gi\|227835726\|gb\|EEJ... gi\|192932062, gi... - gi\|193062396\|ref\|ZP_03043491.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|237704795, gi... - gi\|237704795\|ref\|ZP_04535276.1\| acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Esc... gi\|194432917, gi... - gi\|194432917\|ref\|ZP_03065201.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Shigella... gi\|194436189, gi... - gi\|194436189\|ref\|ZP_03068291.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|91211613, gi\|... - gi\|91211613\|ref\|YP_541599.1\| acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Escher... tr\|A0A0G3HQY2\|A0... - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli (strain K12) GN=...	1.0E-92	[1..304]	[29..332]
gi\|26109110, gi\|... - gi\|26248705\|ref\|NP_754745.1\| acetyl-CoA carboxylase beta subunit [Escherichia coli CFT073], gi\|26109...	6.0E-92	[1..304]	[29..332]
ACCD_SHISS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Shigella sonnei (strain Ss046) GN...	1.0E-91	[1..304]	[1..304]
ACCD_ECO57 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli O157:H7 GN=accD ... ACCD_ECOLI - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) (ACCase beta chain) - E... gi\|15802863, gi\|... - gi\|15802863\|ref\|NP_288890.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli O157:H7 EDL933], ... gi\|218361639, gi... - gi\|218554871\|ref\|YP_002387784.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli IAI1], gi\|218... EG10217 - acetyl-CoA carboxylase, beta (carboxyltransferase) subunit / Acetyl-CoA carboxylase, carboxyltransfe... gi\|218355770, gi... - gi\|218548229\|ref\|YP_002382020.1\| acetyl-CoA carboxylase subunit beta [Escherichia fergusonii ATCC 35... gi\|218428040, gi... - gi\|218690476\|ref\|YP_002398688.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli ED1a], gi\|218... gi\|218365998, gi... - gi\|218559229\|ref\|YP_002392142.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli S88], gi\|2183... gi\|218370778, gi... - gi\|218700792\|ref\|YP_002408421.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli IAI39], gi\|21... gi\|218695915, gi... - gi\|218695915\|ref\|YP_002403582.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli 55989], gi\|21... gi\|195183055 - gi\|195183055\|dbj\|BAG66615.1\| beta subunit of acetyl-CoA carboxylase [Escherichia coli O111:H-] gi\|218432943, gi... - gi\|218705846\|ref\|YP_002413365.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli UMN026], gi\|2... gi\|75209303, gi\|... - gi\|75209303\|ref\|ZP_00709543.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli B171],... gi\|238901491, gi... - gi\|238901491\|ref\|YP_002927287.1\| acetyl-CoA carboxylase, beta (carboxyltranferase) subunit [Escheric... gi\|190900282, gi... - gi\|75226801\|ref\|ZP_00713731.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli B7A], ... gi\|242377949, gi... - gi\|251785676\|ref\|YP_002999980.1\| hypothetical protein B21_02201 [Escherichia coli BL21], gi\|24237794... gi\|75259775 - gi\|75259775\|ref\|ZP_00731077.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli E22] gi\|253978393, gi... - gi\|254289086\|ref\|YP_003054834.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli BL21(DE3)], g... EG10217 - acetyl-CoA carboxylase, beta (carboxyltransferase) subunit / Acetyl-CoA carboxylase, carboxyltransfe... gi\|188487642, gi... - gi\|75515681\|ref\|ZP_00737816.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli 53638]... gi\|253974226, gi... - gi\|254162325\|ref\|YP_003045433.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli B str. REL606... gi\|1799709, gi\|8... - gi\|89109136\|ref\|AP_002916.1\| acetylCoA carboxylase, beta (carboxyltranferase) subunit [Escherichia c... gi\|254593609, gi... - gi\|254794209\|ref\|YP_003079046.1\| acetyl-CoA carboxylase, beta (carboxyltranferase) subunit [Escheric... gi\|13362670, gi\|... - gi\|15832454\|ref\|NP_311227.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli O157:H7 str. Saka... gi\|124526481, gi... - gi\|124526481\|ref\|ZP_01698434.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|83570128 - gi\|83570128\|ref\|ZP_00921575.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Shigella dysenteriae 10... gi\|83588299 - gi\|83588299\|ref\|ZP_00926924.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli 101-1] ACCD_ECO24 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli O139:H28 (strain... ACCD_ECOUT - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli (strain UTI89 / ... ACCD_ECOHS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli O9:H4 (strain HS... gi\|195935695 - gi\|195935695\|ref\|ZP_03081077.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli O157:H7 str. E... ACCD_ECOSM - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli (strain SMS-3-5 ... gi\|208735063, gi... - gi\|208813786\|ref\|ZP_03255115.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|208807491, gi... - gi\|208807491\|ref\|ZP_03249828.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|209399397, gi... - gi\|209399397\|ref\|YP_002271725.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheri... gi\|208738564, gi... - gi\|208818441\|ref\|ZP_03258761.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|215487529, gi... - gi\|215487529\|ref\|YP_002329960.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli O127:H6 str. ... gi\|209913075, gi... - gi\|209919816\|ref\|YP_002293900.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli SE11], gi\|209... gi\|168755073, gi... - gi\|189357757\|gb\|EDU76176.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escherichia ... ACCD_ECOK1 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli O1:K1 / APEC GN=... gi\|168767947, gi... - gi\|189362912\|gb\|EDU81331.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escherichia ... gi\|189368284, gi... - gi\|189368284\|gb\|EDU86700.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escherichia ... gi\|189379043, gi... - gi\|189379043\|gb\|EDU97459.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escherichia ... gi\|189002076, gi... - gi\|189002076\|gb\|EDU71062.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escherichia ... ACCD_ECODH - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli (strain K12 / DH... ACCD_ECOLC - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli (strain ATCC 873...	2.0E-91	[1..304]	[1..304]
gi\|190909759, gi... - gi\|75243127\|ref\|ZP_00726833.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli F11], ... ACCD_ECOL5 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli O6:K15:H31 (stra...	3.0E-91	[1..304]	[1..304]
ACCD_SHIDS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Shigella dysenteriae serotype 1 (... ACCD_SHIB3 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Shigella boydii serotype 18 (stra...	4.0E-91	[1..304]	[1..304]
gi\|192958428, gi... - gi\|75238099\|ref\|ZP_00722104.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli E11001...	4.0E-91	[1..304]	[1..304]
ACCD_SHIBS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Shigella boydii serotype 4 (strai...	4.0E-91	[1..304]	[1..304]
gi\|62180938, gi\|... - gi\|62180938\|ref\|YP_217355.1\| acetyl-CoA carboxylase beta subunit [Salmonella enterica subsp. enteric...	5.0E-91	[1..304]	[27..330]
gi\|30063742, gi\|... - gi\|30063742\|ref\|NP_837913.1\| acetyl-CoA carboxylase subunit beta [Shigella flexneri 2a str. 2457T], ... ACCD_SHIFL - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Shigella flexneri GN=accD PE=3 SV... gi\|56383640, gi\|... - gi\|56480089\|ref\|NP_708198.2\| acetyl-CoA carboxylase subunit beta [Shigella flexneri 2a str. 301], gi...	1.0E-90	[1..304]	[1..304]

Back

Predicted Domain #1

Region A:
Residues: [1-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWIERIKSN ITPTRKASIP EGVWTKCDSC GQVLYRAELE RNLEVCPKCD HHMRMSARNR  60
   61 LHSLLDEGSL VELGSELEPK DVLKFRDSKK YKDRLASAQK ETGEKDALVV MKGTLHGMPV 120
  121 VAAAFEFAFM GGSMGSVVGA RFVRAVEQAL EDNCPLVCFS ASGGARMQEA LMSLMQMAKT 180
  181 SAALAKMQER GLPYISVLTD PTMGGVSASF AMLGDLNIAE PKALIGFAGP RVIEQTVREK 240
  241 LPPGFQRSEF LIEKGAIDMI VRRPEMRLKL ASILAKLMNL PAPNPDAPRE GVVVPPAPDQ 300
  301 ESEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.0
Match:	2f9yB
Description:	No description for 2f9yB was found.

Predicted functions:

Term	Confidence	Notes
acetyl-CoA carboxylase activity	10.6452464693016	bayes_pls_golite062009
CoA carboxylase activity	10.4560118435089	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	10.291155621143	bayes_pls_golite062009
ligase activity	5.44906329604668	bayes_pls_golite062009
biotin carboxylase activity	4.73758144982083	bayes_pls_golite062009
enoyl-CoA hydratase activity	2.20341273353803	bayes_pls_golite062009
catalytic activity	1.46154163027498	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity	0.71437881404683	bayes_pls_golite062009
dodecenoyl-CoA delta-isomerase activity	0.712418056146834	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing C=C bonds	0.0918189681606029	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: