YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|205336307, gi...
Organism:	Salmonella enterica subsp. enterica serovar Heidelberg str. SL486
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|205336307, gi....

Description	E-value	Query Range	Subject Range
gi\|56416148, gi\|... - gi\|56416148\|ref\|YP_153223.1\| putative ATPase [Salmonella enterica subsp. enterica serovar Paratyphi ...	2.0E-49	[1..153]	[1..153]
lcl\|NC_016856.1_... - [gene=yjeE] [protein=putative ATPase] [protein_id=YP_005240669.1] [location=4612717..4613178] gi\|16767603, gi\|... - gi\|16767603\|ref\|NP_463218.1\| putative ATPase [Salmonella typhimurium LT2], gi\|16422917\|gb\|AAL23177.1... gi\|205327105, gi... - gi\|205327105\|gb\|EDZ13869.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...	4.0E-49	[1..153]	[1..153]
gi\|67157124 - gi\|67157124\|ref\|ZP_00418486.1\| Protein of unknown function UPF0079 [Azotobacter vinelandii AvOP] gi\|67085801, gi\|... - gi\|67157124\|ref\|ZP_00418486.1\| Protein of unknown function UPF0079 [Azotobacter vinelandii AvOP], gi...	5.0E-48	[4..152]	[525..673]
gi\|110644525, gi... - gi\|110644525\|ref\|YP_672255.1\| putative ATPase [Escherichia coli 536], gi\|110346117\|gb\|ABG72354.1\| pu... gi\|237703835, gi... - gi\|237703835\|ref\|ZP_04534316.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91213717, gi\|... - gi\|91213717\|ref\|YP_543703.1\| putative ATPase [Escherichia coli UTI89], gi\|91075291\|gb\|ABE10172.1\| hy... gi\|115515639, gi... - gi\|117626515\|ref\|YP_859838.1\| putative ATPase [Escherichia coli APEC O1], gi\|115515639\|gb\|ABJ03714.1... gi\|75236179, gi\|... - gi\|75236179\|ref\|ZP_00720301.1\| COG0802: Predicted ATPase or kinase [Escherichia coli F11], gi\|191174... gi\|218561327, gi... - gi\|218561327\|ref\|YP_002394240.1\| putative ATPase [Escherichia coli S88], gi\|218368096\|emb\|CAR05903.1...	1.0E-47	[1..152]	[1..152]
gi\|193070851, gi... - gi\|75234283\|ref\|ZP_00718671.1\| COG0802: Predicted ATPase or kinase [Escherichia coli E110019], gi\|19... gi\|191165634, gi... - gi\|75231240\|ref\|ZP_00717647.1\| COG0802: Predicted ATPase or kinase [Escherichia coli B7A], gi\|191165... gi\|75212283, gi\|... - gi\|75212283\|ref\|ZP_00712323.1\| COG0802: Predicted ATPase or kinase [Escherichia coli B171], gi\|19442... gi\|75198014, gi\|... - gi\|75198014\|ref\|ZP_00708084.1\| COG0802: Predicted ATPase or kinase [Escherichia coli HS], gi\|1571636... gi\|82546591, gi\|... - gi\|82546591\|ref\|YP_410538.1\| putative ATPase [Shigella boydii Sb227], gi\|81248002\|gb\|ABB68710.1\| con... gi\|82779450, gi\|... - gi\|82779450\|ref\|YP_405799.1\| putative ATPase [Shigella dysenteriae Sd197], gi\|81243598\|gb\|ABB64308.1... gi\|73858130, gi\|... - gi\|74314653\|ref\|YP_313072.1\| putative ATPase [Shigella sonnei Ss046], gi\|73858130\|gb\|AAZ90837.1\| con... gi\|75255895 - gi\|75255895\|ref\|ZP_00727627.1\| COG0802: Predicted ATPase or kinase [Escherichia coli E22] gi\|75188879, gi\|... - gi\|75188879\|ref\|ZP_00702146.1\| COG0802: Predicted ATPase or kinase [Escherichia coli E24377A], gi\|15... gi\|187732615, gi... - gi\|75179461\|ref\|ZP_00699465.1\| COG0802: Predicted ATPase or kinase [Shigella boydii BS512], gi\|18773... gi\|194421537, gi... - gi\|83585094\|ref\|ZP_00923747.1\| COG0802: Predicted ATPase or kinase [Escherichia coli 101-1], gi\|1944... YJEE_ECOLI - UPF0079 ATP-binding protein yjeE - Escherichia coli TSAE_SHIFL - tRNA threonylcarbamoyladenosine biosynthesis protein TsaE OS=Shigella flexneri GN=tsaE PE=3 SV=1 gi\|24054850, gi\|... - gi\|24115523\|ref\|NP_710033.1\| putative ATPase [Shigella flexneri 2a str. 301], gi\|24054850\|gb\|AAN4574... gi\|30065540, gi\|... - gi\|30065540\|ref\|NP_839711.1\| putative ATPase [Shigella flexneri 2a str. 2457T], gi\|30043804\|gb\|AAP19... gi\|188014487, gi... - gi\|188014487\|gb\|EDU52609.1\| putative P-loop hydrolase [Escherichia coli O157:H7 str. EC4113], gi\|168... TSAE_ECO57 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaE OS=Escherichia coli O157:H7 GN=tsaE PE=3 S... gi\|187770290, gi... - gi\|187770290\|gb\|EDU34134.1\| putative P-loop hydrolase [Escherichia coli O157:H7 str. EC4196], gi\|168... EG11757 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; ADP binding protein / tRNA(NNU) t... gi\|169756750, gi... - gi\|170021822\|ref\|YP_001726776.1\| putative ATPase [Escherichia coli ATCC 8739], gi\|169756750\|gb\|ACA79... gi\|15804757, gi\|... - gi\|15804757\|ref\|NP_290798.1\| putative ATPase [Escherichia coli O157:H7 EDL933], gi\|12519153\|gb\|AAG59... gi\|170083614, gi... - gi\|170083614\|ref\|YP_001732934.1\| ATPase with strong ADP affinity [Escherichia coli str. K-12 substr.... gi\|15834398, gi\|... - gi\|15834398\|ref\|NP_313171.1\| putative ATPase [Escherichia coli O157:H7 str. Sakai], gi\|13364621\|dbj\|... gi\|110808086, gi... - gi\|110808086\|ref\|YP_691606.1\| putative ATPase [Shigella flexneri 5 str. 8401], gi\|110617634\|gb\|ABF06... gi\|238903275, gi... - gi\|238903275\|ref\|YP_002929071.1\| ATPase with strong ADP affinity [Escherichia coli BW2952], gi\|23886... EG11757 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; ADP binding protein / tRNA(NNU) t... gi\|251787418, gi... - gi\|251787418\|ref\|YP_003001722.1\| hypothetical protein B21_03997 [Escherichia coli BL21], gi\|24237969... gi\|253980154, gi... - gi\|254290847\|ref\|YP_003056595.1\| ATPase with strong ADP affinity [Escherichia coli BL21(DE3)], gi\|25... gi\|254037182, gi... - gi\|254037182\|ref\|ZP_04871259.1\| ATPase with strong ADP affinity [Escherichia sp. 1_1_43], gi\|2268402... gi\|253975998, gi... - gi\|254164097\|ref\|YP_003047205.1\| ATPase with strong ADP affinity [Escherichia coli B str. REL606], g... gi\|208813384, gi... - gi\|208813384\|ref\|ZP_03254713.1\| putative P-loop hydrolase [Escherichia coli O157:H7 str. EC4045], gi... gi\|254796187, gi... - gi\|254796187\|ref\|YP_003081024.1\| ATPase with strong ADP affinity [Escherichia coli O157:H7 str. TW14... gi\|208820533, gi... - gi\|208820533\|ref\|ZP_03260853.1\| putative P-loop hydrolase [Escherichia coli O157:H7 str. EC4042], gi... gi\|209914915, gi... - gi\|209921656\|ref\|YP_002295740.1\| putative ATPase [Escherichia coli SE11], gi\|209914915\|dbj\|BAG79989.... gi\|89110888, gi\|... - gi\|89110888\|ref\|AP_004668.1\| ATPase with strong ADP affinity [Escherichia coli str. K-12 substr. W31... gi\|218358980, gi... - gi\|218551438\|ref\|YP_002385230.1\| putative ATPase [Escherichia fergusonii ATCC 35469], gi\|218358980\|e... gi\|218363489, gi... - gi\|218556720\|ref\|YP_002389634.1\| putative ATPase [Escherichia coli IAI1], gi\|218363489\|emb\|CAR01143.... gi\|218354649, gi... - gi\|218697917\|ref\|YP_002405584.1\| putative ATPase [Escherichia coli 55989], gi\|218354649\|emb\|CAV01637... gi\|218372851, gi... - gi\|218702865\|ref\|YP_002410494.1\| putative ATPase [Escherichia coli IAI39], gi\|218372851\|emb\|CAR20730... gi\|218434876, gi... - gi\|218707779\|ref\|YP_002415298.1\| putative ATPase [Escherichia coli UMN026], gi\|218434876\|emb\|CAR1581...	1.0E-47	[1..152]	[1..152]
gi\|188488933, gi... - gi\|75515407\|ref\|ZP_00737564.1\| COG0802: Predicted ATPase or kinase [Escherichia coli 53638], gi\|1884...	1.0E-47	[1..152]	[1..152]
gi\|46914875, gi\|... - gi\|54310434\|ref\|YP_131454.1\| putative nucleotide-binding protein [Photobacterium profundum SS9], gi\|...	3.0E-47	[1..151]	[1..151]
gi\|26111492, gi\|... - gi\|26251060\|ref\|NP_757100.1\| putative ATPase [Escherichia coli CFT073], gi\|26111492\|gb\|AAN83674.1\|AE... gi\|218430066, gi... - gi\|218692502\|ref\|YP_002400714.1\| putative ATPase [Escherichia coli ED1a], gi\|218430066\|emb\|CAR10911.... gi\|227836362, gi... - gi\|227886789\|ref\|ZP_04004594.1\| ATPase [Escherichia coli 83972], gi\|227836362\|gb\|EEJ46828.1\| ATPase ...	3.0E-47	[1..152]	[1..152]
gi\|28899595, gi\|... - gi\|28899595\|ref\|NP_799200.1\| putative nucleotide-binding protein [Vibrio parahaemolyticus RIMD 22106... gi\|28807831 - gi\|28807831\|dbj\|BAC61084.1\| putative nucleotide-binding protein [Vibrio parahaemolyticus RIMD 221063... gi\|153840362, gi... - gi\|153840362\|ref\|ZP_01993029.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|...	4.0E-47	[1..151]	[1..151]
gi\|91188607, gi\|... - gi\|91227457\|ref\|ZP_01261821.1\| putative nucleotide-binding protein [Vibrio alginolyticus 12G01], gi\|...	6.0E-47	[1..151]	[1..151]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNRVIPLPD EQATLDLGQR VANACDGATV IYLYGDLGAG KTTFSRGFLQ ALGHNGNVKS  60
   61 PTYTLVEPYA LDNMMVYHFD LYRLADPEEL EFMGIRDYFA NDAICLVEWP QQGKGVLPDP 120
  121 DVEIHIDYQA QGREARVSAV SSSGHSLLAR LAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1fl9A
Description:	Hypothetical protein HI0065
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.36550713198424	bayes_pls_golite062009
catalytic activity	0.234613562021476	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.166100211611062	bayes_pls_golite062009
pyrophosphatase activity	0.159702441149605	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.149170905385965	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.147838751017739	bayes_pls_golite062009
hydrolase activity	0.0436758932827116	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: