YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|205338742, gi...
Organism:	Salmonella enterica subsp. enterica serovar Heidelberg str. SL486
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|205338742, gi....

Description	E-value	Query Range	Subject Range
gi\|148654949, gi... - gi\|148654949\|ref\|YP_001275154.1\| spermidine/putrescine ABC transporter ATPase subunit [Roseiflexus s...	2.0E-54	[2..202]	[27..223]
gi\|27351499, gi\|... - gi\|27378352\|ref\|NP_769881.1\| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110]...	4.0E-54	[2..203]	[48..245]
gi\|78519438, gi\|... - gi\|78693883\|ref\|ZP_00858397.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Bradyrhizo...	2.0E-53	[2..203]	[48..245]
gi\|48835579 - ref\|ZP_00292578.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase components [The... POTA_THEFY - Spermidine/putrescine import ATP-binding protein PotA OS=Thermobifida fusca (strain YX) GN=potA PE=3...	3.0E-53	[2..202]	[53..249]
POTA_DESAG - Spermidine/putrescine import ATP-binding protein PotA OS=Desulfovibrio alaskensis (strain G20) GN=po...	4.0E-53	[4..203]	[33..228]
gi\|17936034, gi\|... - gi\|17936034\|ref\|NP_532824.1\| ABC transporter, nucleotide binding/ATPase protein [Agrobacterium tumef... gi\|25297123, gi\|... - pir\|\|H97617 ABC transporter, ATP-binding protein VCA0602 [imported] - Agrobacterium tumefaciens (str...	1.0E-52	[2..203]	[27..224]
gi\|86358496, gi\|... - gi\|86358496\|ref\|YP_470388.1\| ABC transporter ATP-binding protein [Rhizobium etli CFN 42], gi\|8628259...	2.0E-52	[2..203]	[27..224]
gi\|115253492, gi... - gi\|116248842\|ref\|YP_764683.1\| putative ATP-binding component of ABC transporter [Rhizobium leguminos...	2.0E-52	[3..203]	[28..224]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQGTLYIVS APSGAGKSSL IQALLKTQPL YDTQVSVSHT TRAPRPGEVH GEHYFFVNHD  60
   61 EFKTMIGREA FLEHAEVFGN YYGTSRETIE QVLATGVDVF LDIDWQGAQQ IREKMPQARS 120
  121 IFILPPSKIE LDRRLRGRGQ DSEEVIAKRM AQAVAEMSHY AEYDYLIVND DFDTALSDLK 180
  181 TIIRAERLRM SRQKQRHDAL ISKLLAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	2an9A
Description:	Crystal Structure Of Oligomeric E.coli Guanylate Kinase In Complex With GDP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleobase, nucleoside, nucleotide kinase activity	3.66392587433723	bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism	3.47528445676761	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	2.55741461337855	bayes_pls_golite062009
substrate-specific transporter activity	2.54103332067513	bayes_pls_golite062009
binding	2.44689197844883	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	2.40650518173039	bayes_pls_golite062009
nucleotide kinase activity	2.24094813695083	bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor	1.96697952975573	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.92480060698169	bayes_pls_golite062009
ion transmembrane transporter activity	1.69194088788064	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.60317778681063	bayes_pls_golite062009
cation transmembrane transporter activity	1.48327844851166	bayes_pls_golite062009
nucleic acid binding	1.08697924060619	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
DNA binding	0.702147676354075	bayes_pls_golite062009
adenylate kinase activity	0.447752711852745	bayes_pls_golite062009
transcription regulator activity	0.287777990975748	bayes_pls_golite062009
helicase activity	0.0775311459068899	bayes_pls_golite062009
protein binding	0.071010918255742	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: