YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190407534
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190407534.

Description	E-value	Query Range	Subject Range
gi\|151945314 - gi\|151945314\|gb\|EDN63557.1\| iron-sulfur cluster nifu-like protein [Saccharomyces cerevisiae YJM789] gi\|190407534 - gi\|190407534\|gb\|EDV10801.1\| iron sulfur cluster assembly protein 2, mitochondrial precursor [Sacchar... ISU2 - Conserved protein of the mitochondrial matrix, required for synthesis of mitochondrial and cytosolic... ISU2_YEAST - Iron sulfur cluster assembly protein 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 20450...	2.0E-60	[1..156]	[1..156]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-57	[1..150]	[1..150]
CG9836-PA - This gene is referred to in FlyBase by the symbol Dmel\CG9836 (CG9836, FBgn0037637). It is a protein... gi\|195330562, gi... - gi\|195330562\|ref\|XP_002031972.1\| GM26300 [Drosophila sechellia], gi\|194120915\|gb\|EDW42958.1\| GM26300... gi\|220954788, gi... - gi\|220954788\|gb\|ACL89937.1\| CG9836-PA [synthetic construct], gi\|220944960\|gb\|ACL85023.1\| CG9836-PA [...	3.0E-55	[7..154]	[6..152]
ISCU_MOUSE - Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1	3.0E-53	[13..153]	[22..161]
gi\|117645092, gi... - gi\|157929172\|gb\|ABW03871.1\| iron-sulfur cluster scaffold homolog (E. coli) [synthetic construct], gi... ISCU - iron-sulfur cluster scaffold homolog (E. coli)	4.0E-53	[13..153]	[21..160]
gi\|161362058, gi... - gi\|161612694\|ref\|YP_001586659.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Parat... gi\|167549431, gi... - gi\|205325314\|gb\|EDZ13153.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|167992667, gi... - gi\|205329085\|gb\|EDZ15849.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|168232115, gi... - gi\|205333708\|gb\|EDZ20472.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|238912663 - gi\|238912663\|ref\|ZP_04656500.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Tennes... gi\|160863650, gi... - gi\|161502303\|ref\|YP_001569415.1\| scaffold protein [Salmonella enterica subsp. arizonae serovar 62:z4... gi\|197938255, gi... - gi\|198243739\|ref\|YP_002216607.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. ente... gi\|200388352, gi... - gi\|200388352\|ref\|ZP_03214964.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enter... gi\|16761456 - gi\|16761456\|ref\|NP_457073.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi str... gi\|204929622, gi... - gi\|204929622\|ref\|ZP_03220696.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enter... gi\|205273422, gi... - gi\|205353641\|ref\|YP_002227442.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Galli... gi\|194735413, gi... - gi\|194735413\|ref\|YP_002115604.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=nifU] [protein=scaffold protein] [protein_id=YP_005238644.1] [location=complement(2732675..273... gi\|197248479, gi... - gi\|197248479\|ref\|YP_002147497.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. ente... gi\|197262104, gi... - gi\|197262104\|ref\|ZP_03162178.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enter... gi\|197361515, gi... - gi\|197361515\|ref\|YP_002141151.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Parat... gi\|168821478, gi... - gi\|205341949\|gb\|EDZ28713.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|194402304, gi... - gi\|194443641\|ref\|YP_002041803.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. ente... gi\|62128739, gi\|... - gi\|62181106\|ref\|YP_217523.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Choleraes... gi\|194448547, gi... - gi\|194448547\|ref\|YP_002046603.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Heide... gi\|56126837, gi\|... - gi\|56412580\|ref\|YP_149655.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Paratyphi... gi\|194458472, gi... - gi\|194472108\|ref\|ZP_03078092.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enter... gi\|197288876, gi... - gi\|197288876\|gb\|EDY28249.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|205337684, gi... - gi\|205337684\|gb\|EDZ24448.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|168261416, gi... - gi\|205349671\|gb\|EDZ36302.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|168466702, gi... - gi\|195630678\|gb\|EDX49270.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|213855573 - gi\|213855573\|ref\|ZP_03383813.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|224582918, gi... - gi\|224582918\|ref\|YP_002636716.1\| NifU-like protein [Salmonella enterica subsp. enterica serovar Para... gi\|213425312 - gi\|213425312\|ref\|ZP_03358062.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213580752 - gi\|213580752\|ref\|ZP_03362578.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213610150 - gi\|213610150\|ref\|ZP_03369976.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213646426 - gi\|213646426\|ref\|ZP_03376479.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|16765862, gi\|... - gi\|16765862\|ref\|NP_461477.1\| scaffold protein [Salmonella typhimurium LT2], gi\|16421087\|gb\|AAL21436.... gi\|207857950, gi... - gi\|207857950\|ref\|YP_002244601.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Enter... gi\|29136472, gi\|... - gi\|29140847\|ref\|NP_804189.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213028535 - gi\|213028535\|ref\|ZP_03342982.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213161572 - gi\|213161572\|ref\|ZP_03347282.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|25285919, gi\|... - gi\|25285919\|pir\|\|AE0824 NifU-like protein [imported] - Salmonella enterica subsp. enterica serovar T... gi\|213419977 - gi\|213419977\|ref\|ZP_03353043.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ...	6.0E-53	[25..153]	[1..128]
gi\|194427319, gi... - gi\|75211495\|ref\|ZP_00711585.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|215487879, gi... - gi\|215487879\|ref\|YP_002330310.1\| scaffold protein [Escherichia coli O127:H6 str. E2348/69], gi\|21526... gi\|75237725, gi\|... - gi\|75237725\|ref\|ZP_00721741.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|209913265, gi... - gi\|209920006\|ref\|YP_002294090.1\| scaffold protein [Escherichia coli SE11], gi\|209913265\|dbj\|BAG78339... gi\|157077623, gi... - gi\|75187281\|ref\|ZP_00700548.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|218548034, gi... - gi\|218548034\|ref\|YP_002381825.1\| scaffold protein [Escherichia fergusonii ATCC 35469], gi\|218355575\|... gi\|157162004, gi... - gi\|75196546\|ref\|ZP_00706616.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|217327068, gi... - gi\|217327068\|ref\|ZP_03443151.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. TW... gi\|188489645, gi... - gi\|75515868\|ref\|ZP_00738003.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|218366224, gi... - gi\|218559455\|ref\|YP_002392368.1\| scaffold protein [Escherichia coli S88], gi\|218366224\|emb\|CAR03971.... gi\|73856532, gi\|... - gi\|74313055\|ref\|YP_311474.1\| scaffold protein [Shigella sonnei Ss046], gi\|73856532\|gb\|AAZ89239.1\| co... gi\|218555054, gi... - gi\|218555054\|ref\|YP_002387967.1\| scaffold protein [Escherichia coli IAI1], gi\|218361822\|emb\|CAQ99420... gi\|191172583, gi... - gi\|75240446\|ref\|ZP_00724380.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|218352888, gi... - gi\|218696156\|ref\|YP_002403823.1\| scaffold protein [Escherichia coli 55989], gi\|218352888\|emb\|CAU9868... gi\|75257953, gi\|... - gi\|75257953\|ref\|ZP_00729427.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|218690649, gi... - gi\|218690649\|ref\|YP_002398861.1\| scaffold protein [Escherichia coli ED1a], gi\|218428213\|emb\|CAV17850... gi\|189405048, gi... - gi\|189405048\|ref\|ZP_03007669.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|189368424, gi... - gi\|189403946\|ref\|ZP_02786152.2\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|195936675 - gi\|195936675\|ref\|ZP_03082057.1\| scaffold protein [Escherichia coli O157:H7 str. EC4024] gi\|189405746, gi... - gi\|189405746\|ref\|ZP_03007925.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|83570749, gi\|... - gi\|83570749\|ref\|ZP_00922192.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Shigella dy... gi\|208813237, gi... - gi\|208813237\|ref\|ZP_03254566.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|83586821, gi\|... - gi\|83586821\|ref\|ZP_00925452.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Escherichia... gi\|208726728, gi... - gi\|208806927\|ref\|ZP_03249264.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|209159796, gi... - gi\|209398396\|ref\|YP_002272004.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. E... gi\|208820424, gi... - gi\|208820424\|ref\|ZP_03260744.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... EG13395 - iron-sulfur cluster assembly scaffold protein / Iron-sulfur cluster assembly scaffold protein gi\|218433129, gi... - gi\|218706032\|ref\|YP_002413551.1\| scaffold protein [Escherichia coli UMN026], gi\|218433129\|emb\|CAR140... gi\|218371025, gi... - gi\|218701039\|ref\|YP_002408668.1\| scaffold protein [Escherichia coli IAI39], gi\|218371025\|emb\|CAR1885... gi\|1799937, gi\|8... - gi\|89109335\|ref\|AP_003115.1\| scaffold protein [Escherichia coli str. K-12 substr. W3110], gi\|1799937... gi\|91211856, gi\|... - gi\|91211856\|ref\|YP_541842.1\| scaffold protein [Escherichia coli UTI89], gi\|91073430\|gb\|ABE08311.1\| i... gi\|227887565, gi... - gi\|227887565\|ref\|ZP_04005370.1\| iron-sulfur (Fe-S) cluster formation protein NifU [Escherichia coli ... gi\|237705040, gi... - gi\|237705040\|ref\|ZP_04535521.1\| scaffold protein [Escherichia sp. 3_2_53FAA], gi\|226901406\|gb\|EEH876... gi\|238901694, gi... - gi\|238901694\|ref\|YP_002927490.1\| scaffold protein [Escherichia coli BW2952], gi\|238863511\|gb\|ACR6550... gi\|251785856, gi... - gi\|251785856\|ref\|YP_003000160.1\| hypothetical protein B21_02385 [Escherichia coli BL21], gi\|24237812... gi\|253978571, gi... - gi\|254289264\|ref\|YP_003055012.1\| scaffold protein [Escherichia coli BL21(DE3)], gi\|253978571\|gb\|ACT4... gi\|169889974, gi... - gi\|170082139\|ref\|YP_001731459.1\| scaffold protein [Escherichia coli str. K-12 substr. DH10B], gi\|169... gi\|169754116, gi... - gi\|170019188\|ref\|YP_001724142.1\| scaffold protein [Escherichia coli ATCC 8739], gi\|169754116\|gb\|ACA7... gi\|187770617, gi... - gi\|187775822\|ref\|ZP_02992728.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|170520725, gi... - gi\|170683007\|ref\|YP_001744718.1\| FeS cluster assembly scaffold IscU [Escherichia coli SMS-3-5], gi\|1... gi\|189009962, gi... - gi\|189009962\|ref\|ZP_03006157.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|188017127, gi... - gi\|188024722\|ref\|ZP_02997219.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|189403142, gi... - gi\|189403142\|ref\|ZP_03006972.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... gi\|189356590, gi... - gi\|189402263\|ref\|ZP_03006649.1\| FeS cluster assembly scaffold IscU [Escherichia coli O157:H7 str. EC... ISCU_SHIFL - Iron-sulfur cluster assembly scaffold protein IscU OS=Shigella flexneri GN=iscU PE=3 SV=1 ISCU_ECOL6 - Iron-sulfur cluster assembly scaffold protein IscU OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7... gi\|24052952, gi\|... - gi\|24113858\|ref\|NP_708368.1\| scaffold protein [Shigella flexneri 2a str. 301], gi\|24052952\|gb\|AAN440... ISCU_ECO57 - Iron-sulfur cluster assembly scaffold protein IscU OS=Escherichia coli O157:H7 GN=iscU PE=1 SV=1 gi\|30063919, gi\|... - gi\|30063919\|ref\|NP_838090.1\| scaffold protein [Shigella flexneri 2a str. 2457T], gi\|30042175\|gb\|AAP1... gi\|15803056, gi\|... - gi\|15803056\|ref\|NP_289086.1\| scaffold protein [Escherichia coli O157:H7 EDL933], gi\|12516933\|gb\|AAG5... EG13395 - iron-sulfur cluster assembly scaffold protein / Iron-sulfur cluster assembly scaffold protein NIFU_ECOLI - NifU-like protein - Escherichia coli gi\|115513881, gi... - gi\|117624757\|ref\|YP_853670.1\| scaffold protein [Escherichia coli APEC O1], gi\|115513881\|gb\|ABJ01956.... gi\|124529518, gi... - gi\|124529518\|ref\|ZP_01700488.1\| FeS cluster assembly scaffold IscU [Escherichia coli B], gi\|12449982... gi\|254162503, gi... - gi\|254162503\|ref\|YP_003045611.1\| scaffold protein [Escherichia coli B str. REL606], gi\|253974404\|gb\|... gi\|254794479, gi... - gi\|254794479\|ref\|YP_003079316.1\| scaffold protein [Escherichia coli O157:H7 str. TW14359], gi\|254593... gi\|15832649, gi\|... - gi\|15832649\|ref\|NP_311422.1\| scaffold protein [Escherichia coli O157:H7 str. Sakai], gi\|13362866\|dbj... gi\|110344286, gi... - gi\|110642694\|ref\|YP_670424.1\| scaffold protein [Escherichia coli 536], gi\|110344286\|gb\|ABG70523.1\| N... gi\|110806460, gi... - gi\|110806460\|ref\|YP_689980.1\| scaffold protein [Shigella flexneri 5 str. 8401], gi\|110616008\|gb\|ABF0... NIFU_ECOL6 - NifU-like protein OS=Escherichia coli O6 GN=nifU PE=3 SV=1 gi\|82777912, gi\|... - gi\|82777912\|ref\|YP_404261.1\| scaffold protein [Shigella dysenteriae Sd197], gi\|81242060\|gb\|ABB62770....	7.0E-53	[25..153]	[1..128]
isu1 - mitochondrial iron-sulfur cluster assembly scaffold protein Isu1 ISU1_SCHPO - Iron sulfur cluster assembly protein 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATC...	2.0E-52	[7..154]	[37..180]
gi\|240013962 - gi\|240013962\|ref\|ZP_04720875.1\| scaffold protein [Neisseria gonorrhoeae DGI18] gi\|240016404 - gi\|240016404\|ref\|ZP_04722944.1\| scaffold protein [Neisseria gonorrhoeae FA6140] gi\|239999130 - gi\|239999130\|ref\|ZP_04719054.1\| scaffold protein [Neisseria gonorrhoeae 35/02] gi\|240115865 - gi\|240115865\|ref\|ZP_04729927.1\| scaffold protein [Neisseria gonorrhoeae PID18] gi\|240118163 - gi\|240118163\|ref\|ZP_04732225.1\| scaffold protein [Neisseria gonorrhoeae PID1] gi\|240080523 - gi\|240080523\|ref\|ZP_04725066.1\| scaffold protein [Neisseria gonorrhoeae FA19] gi\|240113109 - gi\|240113109\|ref\|ZP_04727599.1\| scaffold protein [Neisseria gonorrhoeae MS11] gi\|240125902 - gi\|240125902\|ref\|ZP_04738788.1\| scaffold protein [Neisseria gonorrhoeae SK-92-679] gi\|240128414 - gi\|240128414\|ref\|ZP_04741075.1\| scaffold protein [Neisseria gonorrhoeae SK-93-1035] gi\|240121531 - gi\|240121531\|ref\|ZP_04734493.1\| scaffold protein [Neisseria gonorrhoeae PID24-1] gi\|240123711 - gi\|240123711\|ref\|ZP_04736667.1\| scaffold protein [Neisseria gonorrhoeae PID332] gi\|254669832 - gi\|254669832\|emb\|CBA04214.1\| NifU-like protein [Neisseria meningitidis alpha153] gi\|254493906, gi... - gi\|254493906\|ref\|ZP_05107077.1\| nitrogen fixation protein nifU [Neisseria gonorrhoeae 1291], gi\|2265... gi\|254805176, gi... - gi\|254805176\|ref\|YP_003083397.1\| putative NifU-like protein [Neisseria meningitidis], gi\|254668718\|e... gi\|59801061, gi\|... - gi\|59801061\|ref\|YP_207773.1\| scaffold protein [Neisseria gonorrhoeae FA 1090], gi\|59717956\|gb\|AAW893... gi\|161595807, gi... - gi\|161870254\|ref\|YP_001599424.1\| scaffold protein [Neisseria meningitidis 053442], gi\|161595807\|gb\|A... gi\|11256594 - pir\|\|G81852 iron-sulfur cofactor synthesis protein nifU homolog NMA1596 [similarity] - Neisseria men... gi\|224957017, gi... - gi\|225154711\|ref\|ZP_03723211.1\| hypothetical protein NEILACOT_02531 [Neisseria lactamica ATCC 23970]... gi\|7380237, gi\|1... - gi\|7380237\|emb\|CAB84823.1\| NifU-like protein [Neisseria meningitidis Z2491], gi\|218768397\|ref\|YP_002... gi\|121635086, gi... - gi\|121635086\|ref\|YP_975331.1\| scaffold protein [Neisseria meningitidis FAM18], gi\|120866792\|emb\|CAM1... gi\|193934133, gi... - gi\|194098843\|ref\|YP_002001906.1\| scaffold protein [Neisseria gonorrhoeae NCCP11945], gi\|193934133\|gb...	4.0E-52	[25..151]	[1..126]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFARLANPAH FKPLTGSHIT RAAKRLYHPK VIDHYTNPRN VGSMDKSLAN VGTGIVGAPA  60
   61 CGDVIKLQIQ VNDKSGIIEN VKFKTFGCGS AIASSSYMTE LVRGMSLDEA VKIKNTEIAK 120
  121 ELSLPPVKLH CSMLAEDAIK AAIKDYKTKR NPSVLH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	78.013228
Match:	PF01592
Description:	NifU-like N terminal domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	1.25897597318598	bayes_pls_golite062009
iron ion binding	0.905595388647019	bayes_pls_golite062009
protein binding	0.257846679116775	bayes_pls_golite062009
catalytic activity	0.256292883613773	bayes_pls_golite062009
transition metal ion binding	0.192770514366253	bayes_pls_golite062009
2 iron, 2 sulfur cluster binding	0.0439466134407704	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: