YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18158791
Organism:	Escherichia coli
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18158791.

Description	E-value	Query Range	Subject Range
gi\|168463056, gi... - gi\|195634182\|gb\|EDX52534.1\| multiple antibiotic resistance protein MarR [Salmonella enterica subsp. ... gi\|238911751 - gi\|238911751\|ref\|ZP_04655588.1\| DNA-binding transcriptional repressor MarR [Salmonella enterica subs... gi\|205343854, gi... - gi\|205343854\|gb\|EDZ30618.1\| multiple antibiotic resistance protein MarR [Salmonella enterica subsp. ... gi\|194401701, gi... - gi\|194443038\|ref\|YP_002040771.1\| multiple antibiotic resistance protein MarR [Salmonella enterica su... MARR_SALTY - Multiple antibiotic resistance protein MarR OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC ... gi\|194451354, gi... - gi\|194451354\|ref\|YP_002045560.1\| DNA-binding transcriptional repressor MarR [Salmonella enterica sub... gi\|4775571, gi\|7... - gi\|7407108\|gb\|AAF61915.1\|AF226275_1 repressor of mar operon [Salmonella enteritidis], gi\|4775571\|emb... gi\|205335425, gi... - gi\|205335425\|gb\|EDZ22189.1\| multiple antibiotic resistance protein MarR [Salmonella enterica subsp. ... gi\|4775568 - gi\|4775568\|emb\|CAB42548.1\| multiple antibiotic resistance R protein (MarR) [Salmonella enterica subs... gi\|62127741, gi\|... - gi\|62180108\|ref\|YP_216525.1\| DNA-binding transcriptional repressor MarR [Salmonella enterica subsp. ... gi\|197291074, gi... - gi\|197291074\|gb\|EDY30427.1\| multiple antibiotic resistance protein MarR [Salmonella enterica subsp. ... MARR_SALTI - Multiple antibiotic resistance protein marR OS=Salmonella typhi GN=marR PE=3 SV=1 gi\|56127774, gi\|... - gi\|56413517\|ref\|YP_150592.1\| DNA-binding transcriptional repressor MarR [Salmonella enterica subsp. ... gi\|205339529, gi... - gi\|205339529\|gb\|EDZ26293.1\| multiple antibiotic resistance protein MarR [Salmonella enterica subsp. ... gi\|205350596, gi... - gi\|205350596\|gb\|EDZ37227.1\| multiple antibiotic resistance protein MarR [Salmonella enterica subsp. ... gi\|161486802 - gi\|161486802\|ref\|NP_805234.2\| DNA-binding transcriptional repressor MarR [Salmonella enterica subsp.... gi\|161501940 - gi\|161501940\|ref\|NP_455960.2\| DNA-binding transcriptional repressor MarR [Salmonella enterica subsp.... gi\|167550027, gi... - gi\|205324958\|gb\|EDZ12797.1\| multiple antibiotic resistance protein MarR [Salmonella enterica subsp. ... gi\|205328932, gi... - gi\|205328932\|gb\|EDZ15696.1\| multiple antibiotic resistance protein MarR [Salmonella enterica subsp. ... gi\|213622082 - gi\|213622082\|ref\|ZP_03374865.1\| DNA-binding transcriptional repressor MarR [Salmonella enterica subs... gi\|213650407 - gi\|213650407\|ref\|ZP_03380460.1\| DNA-binding transcriptional repressor MarR [Salmonella enterica subs... gi\|214001375 - gi\|214001375\|ref\|ZP_03412110.1\| DNA-binding transcriptional repressor MarR [Salmonella enterica subs... MARR_SALTY - Multiple antibiotic resistance protein marR OS=Salmonella typhimurium GN=marR PE=4 SV=1 gi\|224583974, gi... - gi\|224583974\|ref\|YP_002637772.1\| marRAB operon repressor [Salmonella enterica subsp. enterica serova... gi\|205272558, gi... - gi\|205352777\|ref\|YP_002226578.1\| DNA-binding transcriptional repressor MarR [Salmonella enterica sub... gi\|206708782, gi... - gi\|207856979\|ref\|YP_002243630.1\| DNA-binding transcriptional repressor MarR [Salmonella enterica sub... gi\|213053251 - gi\|213053251\|ref\|ZP_03346129.1\| DNA-binding transcriptional repressor MarR [Salmonella enterica subs... gi\|213416938 - gi\|213416938\|ref\|ZP_03350082.1\| DNA-binding transcriptional repressor MarR [Salmonella enterica subs... gi\|197362442, gi... - gi\|197362442\|ref\|YP_002142079.1\| DNA-binding transcriptional repressor MarR [Salmonella enterica sub... gi\|197936986, gi... - gi\|198242470\|ref\|YP_002215617.1\| multiple antibiotic resistance protein MarR [Salmonella enterica su... gi\|200390053, gi... - gi\|200390053\|ref\|ZP_03216664.1\| multiple antibiotic resistance protein MarR [Salmonella enterica sub... gi\|204927804, gi... - gi\|204927804\|ref\|ZP_03219005.1\| multiple antibiotic resistance protein MarR [Salmonella enterica sub... gi\|194471065, gi... - gi\|194471065\|ref\|ZP_03077049.1\| multiple antibiotic resistance protein MarR [Salmonella enterica sub... gi\|194736236, gi... - gi\|194736236\|ref\|YP_002114539.1\| multiple antibiotic resistance protein MarR [Salmonella enterica su... gi\|197251267, gi... - gi\|197251267\|ref\|YP_002146521.1\| multiple antibiotic resistance protein MarR [Salmonella enterica su... gi\|197241171, gi... - gi\|197262916\|ref\|ZP_03162990.1\| multiple antibiotic resistance protein MarR [Salmonella enterica sub... gi\|187370707 - gi\|187370707\|gb\|ACD02416.1\| repressor of mar operon [Salmonella enterica subsp. enterica serovar Gal... gi\|187370709 - gi\|187370709\|gb\|ACD02417.1\| repressor of mar operon [Salmonella enterica subsp. enterica serovar Sen... MARR_SALTI - Multiple antibiotic resistance protein MarR OS=Salmonella typhi GN=marR PE=3 SV=1 lcl\|NC_016856.1_... - [gene=marR] [protein=DNA-binding transcriptional repressor MarR] [protein_id=YP_005237406.1] [locati... gi\|4775571\|emb\|C... - repressor of mar operon [Salmonella enteritidis], multiple antibiotic resistance R protein (MarR) [S... MARR_SALTY - Multiple antibiotic resistance protein marR OS=Salmonella typhimurium GN=marR PE=4 SV=1	123.0	[0..1]	[138..7]
gi\|39996583, gi\|... - gi\|39996583\|ref\|NP_952534.1\| MarR family transcriptional regulator [Geobacter sulfurreducens PCA], g...	122.0	[0..1]	[136..1]
gi\|88924688, gi\|... - gi\|88945717\|ref\|ZP_01148883.1\| regulatory protein, MarR [Desulfotomaculum reducens MI-1], gi\|8892468...	121.0	[0..1]	[137..14]
gi\|117623750, gi... - gi\|117623750\|ref\|YP_852663.1\| DNA-binding transcriptional repressor MarR [Escherichia coli APEC O1],... gi\|191174136, gi... - gi\|75237131\|ref\|ZP_00721181.1\| COG1846: Transcriptional regulators [Escherichia coli F11], gi\|191174... gi\|218365201, gi... - gi\|218558432\|ref\|YP_002391345.1\| DNA-binding transcriptional repressor MarR [Escherichia coli S88], ... gi\|215264814, gi... - gi\|215486742\|ref\|YP_002329173.1\| DNA-binding transcriptional repressor MarR [Escherichia coli O127:H... gi\|91072346, gi\|... - gi\|91210772\|ref\|YP_540758.1\| DNA-binding transcriptional repressor MarR [Escherichia coli UTI89], gi... gi\|237705500, gi... - gi\|237705500\|ref\|ZP_04535981.1\| multiple antibiotic resistance protein MarR [Escherichia sp. 3_2_53F... gi\|110641691, gi... - gi\|110641691\|ref\|YP_669421.1\| DNA-binding transcriptional repressor MarR [Escherichia coli 536], gi\|...	121.0	[0..1]	[138..7]
gi\|168774235, gi... - gi\|187770006\|gb\|EDU33850.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|168768934, gi... - gi\|189361966\|gb\|EDU80385.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|124498909, gi... - gi\|124530910\|ref\|ZP_01701388.1\| transcriptional regulator, MarR family [Escherichia coli B], gi\|1244... gi\|189371762, gi... - gi\|189371762\|gb\|EDU90178.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|168781508, gi... - gi\|189000932\|gb\|EDU69918.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|169755069, gi... - gi\|170020141\|ref\|YP_001725095.1\| DNA-binding transcriptional repressor MarR [Escherichia coli ATCC 8... gi\|75257796, gi\|... - gi\|75257796\|ref\|ZP_00729281.1\| COG1846: Transcriptional regulators [Escherichia coli E22], gi\|193064... gi\|189378124, gi... - gi\|189378124\|gb\|EDU96540.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|193067109, gi... - gi\|75239840\|ref\|ZP_00723801.1\| COG1846: Transcriptional regulators [Escherichia coli E110019], gi\|19... gi\|195937021 - gi\|195937021\|ref\|ZP_03082403.1\| DNA-binding transcriptional repressor MarR [Escherichia coli O157:H7... gi\|191164972, gi... - gi\|75231713\|ref\|ZP_00718054.1\| COG1846: Transcriptional regulators [Escherichia coli B7A], gi\|191164... gi\|170683414, gi... - gi\|170683414\|ref\|YP_001743694.1\| multiple antibiotic resistance protein MarR [Escherichia coli SMS-3... gi\|161486491 - gi\|161486491\|ref\|NP_837240.2\| DNA-binding transcriptional repressor MarR [Shigella flexneri 2a str. ... gi\|13384163 - gi\|13384163\|gb\|AAK21292.1\|AF337816_2 MarR [Escherichia coli] gi\|161367610 - gi\|161367610\|ref\|NP_287622.2\| DNA-binding transcriptional repressor MarR [Escherichia coli O157:H7 E... gi\|161984932 - gi\|161984932\|ref\|YP_408084.2\| DNA-binding transcriptional repressor MarR [Shigella boydii Sb227] gi\|161950114 - gi\|161950114\|ref\|YP_403216.2\| DNA-binding transcriptional repressor MarR [Shigella dysenteriae Sd197... gi\|168748866, gi... - gi\|188016646\|gb\|EDU54768.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|161986526 - gi\|161986526\|ref\|YP_310531.2\| DNA-binding transcriptional repressor MarR [Shigella sonnei Ss046] gi\|168761376, gi... - gi\|189368107\|gb\|EDU86523.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|168756177, gi... - gi\|189356713\|gb\|EDU75132.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|218370163, gi... - gi\|218700177\|ref\|YP_002407806.1\| DNA-binding transcriptional repressor MarR [Escherichia coli IAI39]... gi\|218351799, gi... - gi\|218695067\|ref\|YP_002402734.1\| DNA-binding transcriptional repressor MarR [Escherichia coli 55989]... gi\|218705014, gi... - gi\|218705014\|ref\|YP_002412533.1\| DNA-binding transcriptional repressor MarR [Escherichia coli UMN026... gi\|15724200 - gi\|15724200\|gb\|AAL06492.1\|AF411963_2 MarR [Shigella flexneri] gi\|38703989 - gi\|38703989\|ref\|NP_310164.2\| repressor of mar operon [Escherichia coli O157:H7] gi\|26108209, gi\|... - gi\|26247807\|ref\|NP_753847.1\| DNA-binding transcriptional repressor MarR [Escherichia coli CFT073], g... gi\|194415999, gi... - gi\|75212898\|ref\|ZP_00712896.1\| COG1846: Transcriptional regulators [Escherichia coli B171], gi\|19442... gi\|208733061, gi... - gi\|208816413\|ref\|ZP_03257592.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H... gi\|75195625, gi\|... - gi\|75195625\|ref\|ZP_00705695.1\| COG1846: Transcriptional regulators [Escherichia coli HS], gi\|1571610... gi\|208724584, gi... - gi\|208811078\|ref\|ZP_03252911.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H... gi\|157158832, gi... - gi\|75190583\|ref\|ZP_00703850.1\| COG1846: Transcriptional regulators [Escherichia coli E24377A], gi\|15... gi\|209400719, gi... - gi\|209400719\|ref\|YP_002270528.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:... gi\|187730965, gi... - gi\|75178603\|ref\|ZP_00698649.1\| COG1846: Transcriptional regulators [Shigella boydii BS512], gi\|18773... gi\|208818844, gi... - gi\|208818844\|ref\|ZP_03259164.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H... gi\|217317518, gi... - gi\|217329079\|ref\|ZP_03445159.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H... gi\|209912070, gi... - gi\|209918811\|ref\|YP_002292895.1\| DNA-binding transcriptional repressor MarR [Escherichia coli SE11],... gi\|218689420, gi... - gi\|218689420\|ref\|YP_002397632.1\| DNA-binding transcriptional repressor MarR [Escherichia coli ED1a],... gi\|218554063, gi... - gi\|218554063\|ref\|YP_002386976.1\| DNA-binding transcriptional repressor MarR [Escherichia coli IAI1],... gi\|38703989 - gi\|38703989\|ref\|NP_310164.2\| DNA-binding transcriptional repressor MarR [Escherichia coli O157:H7 st... gi\|110615099, gi... - gi\|110805551\|ref\|YP_689071.1\| DNA-binding transcriptional repressor MarR [Shigella flexneri 5 str. 8... gi\|227886085, gi... - gi\|227886085\|ref\|ZP_04003890.1\| DNA-binding transcriptional repressor MarR [Escherichia coli 83972],... gi\|254793075, gi... - gi\|254793075\|ref\|YP_003077912.1\| DNA-binding transcriptional repressor of multiple antibiotic resist...	120.0	[0..1]	[138..7]
gi\|98662526 - gi\|98662526\|dbj\|GAA00614.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	119.0	[0..3]	[136..5]
gi\|83570910, gi\|... - gi\|83570910\|ref\|ZP_00922352.1\| COG1846: Transcriptional regulators [Shigella dysenteriae 1012], gi\|1...	119.0	[0..1]	[138..7]
gi\|11245238 - gi\|11245238\|gb\|AAG33516.1\|AF302680_1 repressor marR [Enterobacter cloacae]	119.0	[0..1]	[138..7]
gi\|254288389, gi... - gi\|254288389\|ref\|YP_003054137.1\| DNA-binding transcriptional repressor of multiple antibiotic resist... gi\|253973485, gi... - gi\|254161584\|ref\|YP_003044692.1\| DNA-binding transcriptional repressor of multiple antibiotic resist... EG11435 - transcriptional repressor of multiple antibiotic resistance / Transcription repressor of multiple an... MARR_ECOLI - Multiple antibiotic resistance protein marR - Escherichia coli gi\|169889032, gi... - gi\|170081197\|ref\|YP_001730517.1\| DNA-binding transcriptional repressor of multiple antibiotic resist... EG11435 - transcriptional repressor of multiple antibiotic resistance / Transcription repressor of multiple an... gi\|89108371, gi\|... - gi\|89108371\|ref\|AP_002151.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 subst... gi\|194436640, gi... - gi\|83587881\|ref\|ZP_00926507.1\| COG1846: Transcriptional regulators [Escherichia coli 101-1], gi\|1944... gi\|75512518, gi\|... - gi\|75512518\|ref\|ZP_00735041.1\| COG1846: Transcriptional regulators [Escherichia coli 53638], gi\|1884... gi\|238900750, gi... - gi\|238900750\|ref\|YP_002926546.1\| DNA-binding transcriptional repressor of multiple antibiotic resist... gi\|242377276, gi... - gi\|251785003\|ref\|YP_002999307.1\| hypothetical protein B21_01500 [Escherichia coli BL21], gi\|24237727...	119.0	[0..1]	[138..7]
gi\|114336769, gi... - gi\|71542329\|ref\|ZP_00663967.1\| regulatory protein, MarR [Syntrophomonas wolfei str. Goettingen], gi\|...	117.0	[0..3]	[138..2]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFNEIIPLGR LIHMVNQKKD RLLNEYLSPL DITAAQFKVL CSIRCAACIT PVELKKVLSV  60
   61 DLGALTRMLD RLVCKGWVER LPNPNDKRGV LVKLTTGGAA ICEQCHQLVG QDLHQELTKN 120
  121 LTADEVATLE YLLKKVLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.221849
Match:	1jgsA
Description:	Multiple antibiotic resistance repressor, MarR
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.835523092977445	bayes_pls_golite062009
transcription regulator activity	0.4843036104266	bayes_pls_golite062009
nucleic acid binding	0.37117756729668	bayes_pls_golite062009
DNA binding	0.3118855114645	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: