YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165928015, gi...
Organism:	Yersinia pestis biovar Orientalis str. F1991016
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165928015, gi....

Description	E-value	Query Range	Subject Range
gi\|13363706, gi\|... - gi\|15833486\|ref\|NP_312259.1\| shikimate kinase I [Escherichia coli O157:H7 str. Sakai], gi\|13363706\|d... gi\|209756656, gi... - gi\|25288011\|pir\|\|F86003 shikimate kinase I [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|12518013, gi\|... - gi\|15803893\|ref\|NP_289929.1\| shikimate kinase I [Escherichia coli O157:H7 EDL933], gi\|12518013\|gb\|AA... gi\|13363706, gi\|... - gi\|15833486\|ref\|NP_312259.1\| shikimate kinase I [Escherichia coli O157:H7], gi\|13363706\|dbj\|BAB37655...	4.0E-33	[1..173]	[68..240]
gi\|237703117, gi... - gi\|237703117\|ref\|ZP_04533598.1\| shikimic acid kinase I [Escherichia sp. 3_2_53FAA], gi\|226902381\|gb\|... gi\|110616770, gi... - gi\|110807222\|ref\|YP_690742.1\| shikimate kinase I [Shigella flexneri 5 str. 8401], gi\|110616770\|gb\|AB... gi\|226839061, gi... - gi\|254038555\|ref\|ZP_04872611.1\| shikimate kinase I [Escherichia sp. 1_1_43], gi\|226839061\|gb\|EEH7108... gi\|91074436, gi\|... - gi\|91212862\|ref\|YP_542848.1\| shikimate kinase I [Escherichia coli UTI89], gi\|91074436\|gb\|ABE09317.1\|... gi\|7428049, gi\|6... - pir\|\|A65134 shikimate kinase (EC 2.7.1.71) I - Escherichia coli (strain K-12), gi\|606324\|gb\|AAA58187... gi\|56480324, gi\|... - gi\|56480324\|ref\|NP_709163.2\| shikimate kinase I [Shigella flexneri 2a str. 301], gi\|56383875\|gb\|AAN4... gi\|606324\|gb\|AAA... - shikimic acid kinase I [Escherichia coli] gi\|1789792, gi\|4... - gi\|49176344\|ref\|YP_026215.1\| shikimate kinase I [Escherichia coli K12], gb\|AAC76415.1\| shikimate kin... gi\|26249984, gi\|... - gi\|26249984\|ref\|NP_756024.1\| shikimate kinase I [Escherichia coli CFT073], gi\|26110413\|gb\|AAN82598.1... gi\|115514782, gi... - gi\|117625658\|ref\|YP_858981.1\| shikimate kinase I [Escherichia coli APEC O1], gi\|115514782\|gb\|ABJ0285... gi\|30043588, gi\|... - gi\|30065326\|ref\|NP_839497.1\| shikimate kinase I [Shigella flexneri 2a str. 2457T], gi\|30043588\|gb\|AA...	8.0E-33	[1..173]	[68..240]
gi\|227839399, gi... - gi\|227883520\|ref\|ZP_04001325.1\| shikimate kinase I [Escherichia coli 83972], gi\|227839399\|gb\|EEJ4986... gi\|253322827, gi... - gi\|253771783\|ref\|YP_003034614.1\| Shikimate kinase [Escherichia coli BL21(DE3)], gi\|253322827\|gb\|ACT2... gi\|24053857, gi\|... - ref\|NP_709163.1\| shikimate kinase I [Shigella flexneri 2a str. 301], gb\|AAN44870.1\| shikimate kinas... gi\|110643623, gi... - gi\|110643623\|ref\|YP_671353.1\| shikimate kinase I [Escherichia coli 536], gi\|110345215\|gb\|ABG71452.1\|... gi\|124528164, gi... - gi\|124528164\|ref\|ZP_01699497.1\| Shikimate kinase [Escherichia coli B], gi\|124500819\|gb\|EAY48288.1\| S... gi\|170517741, gi... - gi\|170680023\|ref\|YP_001745633.1\| shikimate kinase [Escherichia coli SMS-3-5], gi\|170517741\|gb\|ACB159... gi\|191167874, gi... - gi\|191167874\|ref\|ZP_03029678.1\| shikimate kinase [Escherichia coli B7A], gi\|190902047\|gb\|EDV61792.1\|... gi\|190908103, gi... - gi\|191171476\|ref\|ZP_03033024.1\| shikimate kinase [Escherichia coli F11], gi\|190908103\|gb\|EDV67694.1\|... gi\|192932539, gi... - gi\|193061749\|ref\|ZP_03042846.1\| shikimate kinase [Escherichia coli E22], gi\|192932539\|gb\|EDV85136.1\|... gi\|193068837, gi... - gi\|193068837\|ref\|ZP_03049797.1\| shikimate kinase [Escherichia coli E110019], gi\|192957913\|gb\|EDV8835... gi\|194414936, gi... - gi\|194426975\|ref\|ZP_03059527.1\| shikimate kinase [Escherichia coli B171], gi\|194414936\|gb\|EDX31206.1... gi\|194431141, gi... - gi\|194431141\|ref\|ZP_03063434.1\| shikimate kinase [Shigella dysenteriae 1012], gi\|194420596\|gb\|EDX366... gi\|194421580, gi... - gi\|194439494\|ref\|ZP_03071569.1\| shikimate kinase [Escherichia coli 101-1], gi\|194421580\|gb\|EDX37592.... gi\|209914101, gi... - gi\|209920842\|ref\|YP_002294926.1\| shikimate kinase I [Escherichia coli SE11], gi\|209914101\|dbj\|BAG791...	8.0E-33	[1..173]	[53..225]
tr\|L7ZUC9\|L7ZUC9... - Shikimate kinase 1 OS=Serratia marcescens WW4 GN=aroK PE=3 SV=1, Shikimate kinase 1 OS=Serratia marc... tr\|G0BAE2\|G0BAE2... - Shikimate kinase 1 OS=Serratia plymuthica (strain AS9) GN=aroK PE=3 SV=1 AROK_SERP5 - Shikimate kinase 1 OS=Serratia proteamaculans (strain 568) GN=aroK PE=3 SV=1 AROK_YERE8 - Shikimate kinase 1 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) G... gi\|238718924, gi... - gi\|77962687\|ref\|ZP_00826504.1\| COG0703: Shikimate kinase [Yersinia mollaretii ATCC 43969], gi\|238797... tr\|I3ALA5\|I3ALA5... - Shikimate kinase 1 OS=Serratia plymuthica S13 GN=aroK PE=3 SV=1, Shikimate kinase 1 OS=Serratia plym... tr\|D4DYM4\|D4DYM4... - Shikimate kinase 1 OS=Serratia odorifera DSM 4582 GN=aroK PE=3 SV=1 gi\|238698080, gi... - gi\|238763778\|ref\|ZP_04624737.1\| Shikimate kinase 1 [Yersinia kristensenii ATCC 33638], gi\|238698080\|... tr\|S5EM89\|S5EM89... - Shikimate kinase 1 OS=Serratia liquefaciens ATCC 27592 GN=aroK PE=3 SV=1 tr\|G0BS88\|G0BS88... - Shikimate kinase 1 OS=Serratia sp. AS12 GN=aroK PE=3 SV=1 gi\|238751131, gi... - gi\|238751131\|ref\|ZP_04612626.1\| Shikimate kinase 1 [Yersinia rohdei ATCC 43380], gi\|238710609\|gb\|EEQ... tr\|G0C5D3\|G0C5D3... - Shikimate kinase 1 OS=Serratia sp. AS13 GN=aroK PE=3 SV=1	1.0E-31	[1..173]	[1..173]
gi\|238792888, gi... - gi\|77976416\|ref\|ZP_00831906.1\| COG0703: Shikimate kinase [Yersinia intermedia ATCC 29909], gi\|238792... gi\|238758714, gi... - gi\|238758714\|ref\|ZP_04619888.1\| Shikimate kinase 1 [Yersinia aldovae ATCC 35236], gi\|238703011\|gb\|EE...	1.0E-31	[1..173]	[1..173]
tr\|U2N5M8\|U2N5M8... - Shikimate kinase I OS=Serratia fonticola AU-P3(3) GN=L580_2429 PE=4 SV=1, Shikimate kinase I OS=Serr... gi\|238783116, gi... - gi\|77958290\|ref\|ZP_00822326.1\| COG0703: Shikimate kinase [Yersinia bercovieri ATCC 43970], gi\|238783...	1.0E-31	[1..173]	[1..173]
AROK_ERWCT - Shikimate kinase 1 OS=Erwinia carotovora subsp. atroseptica GN=aroK PE=3 SV=1 gi\|227329157 - gi\|227329157\|ref\|ZP_03833181.1\| shikimate kinase I [Pectobacterium carotovorum subsp. carotovorum WP... gi\|251756822, gi... - gi\|253690244\|ref\|YP_003019434.1\| Shikimate kinase [Pectobacterium carotovorum subsp. carotovorum PC1... AROK_PECAS - Shikimate kinase 1 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=aroK PE=3 SV=... gi\|227112151 - gi\|227112151\|ref\|ZP_03825807.1\| shikimate kinase I [Pectobacterium carotovorum subsp. brasiliensis P... gi\|255054132, gi... - gi\|255054132\|ref\|ZP_05306380.1\| Shikimate kinase [Pectobacterium wasabiae WPP163], gi\|254990129\|gb\|E...	2.0E-31	[1..173]	[1..173]
AROK_ECOLI - Shikimate kinase 1 (EC 2.7.1.71) (SK 1) (Shikimate kinase I) (SKI) - Escherichia coli gi\|254594704, gi... - gi\|254795304\|ref\|YP_003080141.1\| shikimate kinase I [Escherichia coli O157:H7 str. TW14359], gi\|2545... gi\|254290068, gi... - gi\|254290068\|ref\|YP_003055816.1\| shikimate kinase I [Escherichia coli BL21(DE3)], gi\|253979375\|gb\|AC... gi\|254163318, gi... - gi\|254163318\|ref\|YP_003046426.1\| shikimate kinase I [Escherichia coli B str. REL606], gi\|253975219\|g... gi\|251786643, gi... - gi\|251786643\|ref\|YP_003000947.1\| hypothetical protein B21_03194 [Escherichia coli BL21], gi\|24237891... gi\|89110620, gi\|... - gi\|89110620\|ref\|AP_004400.1\| shikimate kinase I [Escherichia coli str. K-12 substr. W3110], gi\|85676... gi\|238863547, gi... - gi\|238902481\|ref\|YP_002928277.1\| shikimate kinase I [Escherichia coli BW2952], gi\|238863547\|gb\|ACR65... gi\|229775956 - gi\|229775956\|ref\|YP_858981.2\| shikimate kinase I [Escherichia coli APEC O1] AROK_SHIDS - Shikimate kinase 1 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=aroK PE=3 SV=1 gi\|229774933 - gi\|229774933\|ref\|YP_690742.2\| shikimate kinase I [Shigella flexneri 5 str. 8401] AROK_SHIBS - Shikimate kinase 1 OS=Shigella boydii serotype 4 (strain Sb227) GN=aroK PE=3 SV=1 gi\|229560210 - gi\|229560210\|ref\|YP_671353.2\| shikimate kinase I [Escherichia coli 536] gi\|75241520 - gi\|75241520\|ref\|ZP_00725365.1\| COG0703: Shikimate kinase [Escherichia coli F11] gi\|75260321 - gi\|75260321\|ref\|ZP_00731589.1\| COG0703: Shikimate kinase [Escherichia coli E22] gi\|75228956 - gi\|75228956\|ref\|ZP_00715548.1\| COG0703: Shikimate kinase [Escherichia coli B7A] gi\|75236991 - gi\|75236991\|ref\|ZP_00721047.1\| COG0703: Shikimate kinase [Escherichia coli E110019] AROK_ECO57 - Shikimate kinase 1 OS=Escherichia coli O157:H7 GN=aroK PE=3 SV=2 AROK_ECOL6 - Shikimate kinase 1 OS=Escherichia coli O6 GN=aroK PE=3 SV=2 gi\|188490808, gi... - gi\|75516142\|ref\|ZP_00738260.1\| COG0703: Shikimate kinase [Escherichia coli 53638], gi\|188495609\|ref\|... AROK_SHISS - Shikimate kinase 1 OS=Shigella sonnei (strain Ss046) GN=aroK PE=3 SV=1 gi\|83571690 - gi\|83571690\|ref\|ZP_00923130.1\| COG0703: Shikimate kinase [Shigella dysenteriae 1012] gi\|83585099 - gi\|83585099\|ref\|ZP_00923751.1\| COG0703: Shikimate kinase [Escherichia coli 101-1] AROK_ECOHS - Shikimate kinase 1 OS=Escherichia coli O9:H4 (strain HS) GN=aroK PE=3 SV=1 gi\|75211756 - gi\|75211756\|ref\|ZP_00711820.1\| COG0703: Shikimate kinase [Escherichia coli B171] AROK_SHIB3 - Shikimate kinase 1 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=aroK PE=3 SV=1 AROK_SHIFL - Shikimate kinase 1 OS=Shigella flexneri GN=aroK PE=3 SV=2 AROK_ECO24 - Shikimate kinase 1 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=aroK PE=3 SV=1 gi\|161367509 - gi\|161367509\|ref\|NP_289929.2\| shikimate kinase I [Escherichia coli O157:H7 EDL933] gi\|161485820 - gi\|161485820\|ref\|NP_709163.3\| shikimate kinase I [Shigella flexneri 2a str. 301] AROK_ECOL6 - Shikimate kinase 1 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=aroK PE=3 SV=2 gi\|161486377 - gi\|161486377\|ref\|NP_839497.2\| shikimate kinase I [Shigella flexneri 2a str. 2457T] gi\|162139753 - gi\|162139753\|ref\|NP_312259.2\| shikimate kinase I [Escherichia coli O157:H7 str. Sakai] EG10081 - shikimate kinase I / Shikimate kinase I; alkali-inducible AROK_ECO7I - Shikimate kinase 1 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=aroK PE=3 SV=1 AROK_ECOLU - Shikimate kinase 1 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=aroK PE=3 SV=1 AROK_ECOLC - Shikimate kinase 1 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=aroK PE=3 SV=1 AROK_ECODH - Shikimate kinase 1 OS=Escherichia coli (strain K12 / DH10B) GN=aroK PE=3 SV=1 gi\|195934878 - gi\|195934878\|ref\|ZP_03080260.1\| shikimate kinase I [Escherichia coli O157:H7 str. EC4024] gi\|208813581, gi... - gi\|208813581\|ref\|ZP_03254910.1\| shikimate kinase [Escherichia coli O157:H7 str. EC4045], gi\|20873485... gi\|215488671, gi... - gi\|215488671\|ref\|YP_002331102.1\| shikimate kinase I [Escherichia coli O127:H6 str. E2348/69], gi\|215... EG10081 - shikimate kinase I / Shikimate kinase I; alkali-inducible AROK_ECO8A - Shikimate kinase 1 OS=Escherichia coli O8 (strain IAI1) GN=aroK PE=3 SV=1 AROK_ECO45 - Shikimate kinase 1 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=aroK PE=3 SV=1 gi\|218429230, gi... - gi\|218691666\|ref\|YP_002399878.1\| shikimate kinase I [Escherichia coli ED1a], gi\|218429230\|emb\|CAR100... gi\|218697070, gi... - gi\|218697070\|ref\|YP_002404737.1\| shikimate kinase I [Escherichia coli 55989], gi\|218353802\|emb\|CAV00...	2.0E-31	[1..173]	[1..173]
AROK_SALEP - Shikimate kinase 1 OS=Salmonella enteritidis PT4 (strain P125109) GN=aroK PE=3 SV=1 gi\|213053390 - gi\|213053390\|ref\|ZP_03346268.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typh... gi\|213416769 - gi\|213416769\|ref\|ZP_03349913.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typh... gi\|213426743 - gi\|213426743\|ref\|ZP_03359493.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typh... AROK_SALDC - Shikimate kinase 1 OS=Salmonella dublin (strain CT_02021853) GN=aroK PE=3 SV=1 gi\|200386502, gi... - gi\|200386502\|ref\|ZP_03213114.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Vircho... gi\|204928467, gi... - gi\|204928467\|ref\|ZP_03219666.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Javian... AROK_SALTY - Shikimate kinase 1 OS=Salmonella typhimurium GN=aroK PE=3 SV=2 AROK_SALG2 - Shikimate kinase 1 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=aroK PE=3 SV=1 AROK_SALSV - Shikimate kinase 1 OS=Salmonella schwarzengrund (strain CVM19633) GN=aroK PE=3 SV=1 AROK_SALA4 - Shikimate kinase 1 OS=Salmonella agona (strain SL483) GN=aroK PE=3 SV=1 gi\|197243708, gi... - gi\|197265453\|ref\|ZP_03165527.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Saintp... AROK_SALPK - Shikimate kinase 1 OS=Salmonella paratyphi A (strain AKU_12601) GN=aroK PE=3 SV=1 AROK_SALPA - Shikimate kinase 1 OS=Salmonella paratyphi A GN=aroK PE=3 SV=1 gi\|168818704, gi... - gi\|205344461\|gb\|EDZ31225.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Weltevrede... AROK_SALNS - Shikimate kinase 1 OS=Salmonella newport (strain SL254) GN=aroK PE=3 SV=1 AROK_SALHS - Shikimate kinase 1 OS=Salmonella heidelberg (strain SL476) GN=aroK PE=3 SV=1 gi\|194470173, gi... - gi\|194470173\|ref\|ZP_03076157.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Kentuc... gi\|16762800 - gi\|16762800\|ref\|NP_458417.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typhi s... AROK_SALCH - Shikimate kinase 1 OS=Salmonella choleraesuis GN=aroK PE=3 SV=1 gi\|213622640 - gi\|213622640\|ref\|ZP_03375423.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typh... gi\|214000223 - gi\|214000223\|ref\|ZP_03410958.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typh... gi\|224469809, gi... - gi\|224585281\|ref\|YP_002639080.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Par... AROK_SALCH - Shikimate kinase 1 OS=Salmonella choleraesuis GN=aroK PE=3 SV=1 AROK_SALTI - Shikimate kinase 1 OS=Salmonella typhi GN=aroK PE=3 SV=2 gi\|238913610 - gi\|238913610\|ref\|ZP_04657447.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Tenn... AROK_SALTY - Shikimate kinase 1 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=aroK PE=3 SV=2 gi\|29144287, gi\|... - gi\|29144287\|ref\|NP_807629.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typhi s... AROK_SALCH - Shikimate kinase 1 OS=Salmonella choleraesuis (strain SC-B67) GN=aroK PE=3 SV=1 AROK_SALTY - Shikimate kinase 1 OS=Salmonella typhimurium GN=aroK PE=3 SV=2 AROK_SALPA - Shikimate kinase 1 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=aroK PE=3 SV=1 AROK_SALTI - Shikimate kinase 1 OS=Salmonella typhi GN=aroK PE=3 SV=2 gi\|197291497, gi... - gi\|197291497\|gb\|EDY30849.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Schwarzeng... gi\|168241624, gi... - gi\|205339089\|gb\|EDZ25853.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Heidelberg... gi\|168260796, gi... - gi\|205350524\|gb\|EDZ37155.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Hadar str.... gi\|168465249, gi... - gi\|195632225\|gb\|EDX50709.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Newport st... gi\|161505947, gi... - gi\|161505947\|ref\|YP_001573059.1\| shikimate kinase I [Salmonella enterica subsp. arizonae serovar 62:... gi\|167549313, gi... - gi\|205325544\|gb\|EDZ13383.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|205330713, gi... - gi\|205330713\|gb\|EDZ17477.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar 4,[5],12:i... gi\|205333106, gi... - gi\|205333106\|gb\|EDZ19870.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Kentucky s... lcl\|NC_016856.1_... - [gene=aroK] [protein=shikimate kinase I] [protein_id=YP_005239685.1] [location=complement(3656122..3...	2.0E-31	[1..173]	[1..173]
gi\|77975041, gi\|... - gi\|77975041\|ref\|ZP_00830578.1\| COG0703: Shikimate kinase [Yersinia frederiksenii ATCC 33641], gi\|238...	2.0E-31	[1..173]	[1..173]

Back

Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKRNIFLV GPMGAGKSTI GRQLAQQLNM EFFDSDQEIE RRTGADVGWV FDVEGEEGFR  60
   61 DREEKVINEL TEKQGIVLAT GGGSVKSRET RNRLSARGVV VYLETTIEKQ LARTQRDKKR 120
  121 PLLQVDEPPR EVLEALAKER NPLYEEIADV TIRTDDQSAK VVANQIINML ESN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1kagA
Description:	Shikimate kinase (AroK)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: