YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218774777, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	497 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218774777, gi....

Description	E-value	Query Range	Subject Range
tr\|I7BQQ7\|I7BQQ7... - Acetyl-CoA hydrolase/transferase family protein OS=Pseudomonas putida (strain DOT-T1E) GN=cat1 PE=4 ... gi\|82715584, gi\|... - gi\|82737420\|ref\|ZP_00900270.1\| acetyl-CoA hydrolase/transferase family protein [Pseudomonas putida F... tr\|E4RAU3\|E4RAU3... - Acetyl-CoA hydrolase/transferase family protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_01... gi\|26986899, gi\|... - gi\|26986899\|ref\|NP_742324.1\| acetyl-CoA hydrolase/transferase family protein [Pseudomonas putida KT2...	0.0	[1..496]	[1..496]
gi\|3249555 - gi\|3249555\|gb\|AAC38773.1\| coenzyme A transferase PsecoA [Pseudomonas aeruginosa]	0.0	[1..497]	[1..497]
gi\|94417151, gi\|... - gi\|94417151\|ref\|ZP_01296970.1\| hypothetical protein PaerP_01000946 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..497]	[1..497]
gi\|95108407, gi\|... - gi\|95108407\|emb\|CAK13101.1\| putative acetyl-CoA hydrolase/transferase [Pseudomonas entomophila L48],... gi\|95108407 - gi\|95108407\|emb\|CAK13101.1\| putative acetyl-CoA hydrolase/transferase [Pseudomonas entomophila L48]	0.0	[1..495]	[1..495]
gi\|83593262, gi\|... - gi\|83593262\|ref\|YP_427014.1\| Acetyl-CoA hydrolase [Rhodospirillum rubrum ATCC 11170], gi\|83576176\|gb... gi\|48764351 - ref\|ZP_00268903.1\| COG0427: Acetyl-CoA hydrolase [Rhodospirillum rubrum]	0.0	[1..497]	[1..497]
gi\|23469244, gi\|... - gi\|66048243\|ref\|YP_238084.1\| Acetyl-CoA hydrolase [Pseudomonas syringae pv. syringae B728a], gi\|6325...	0.0	[1..497]	[1..497]
gi\|67917520, gi\|... - gi\|67917520\|ref\|ZP_00511126.1\| Acetyl-CoA hydrolase [Chlorobium limicola DSM 245], gi\|67784823\|gb\|EA...	0.0	[3..494]	[4..503]
gi\|146278219, gi... - gi\|83368737\|ref\|ZP_00913598.1\| Acetyl-CoA hydrolase [Rhodobacter sphaeroides ATCC 17025], gi\|8336155...	0.0	[2..494]	[6..498]
tr\|Q87U50\|Q87U50... - Acetyl-CoA hydrolase/transferase family protein OS=Pseudomonas syringae pv. tomato (strain DC3000) G... gi\|28872570, gi\|... - gi\|28872570\|ref\|NP_795189.1\| acetyl-CoA hydrolase/transferase family protein [Pseudomonas syringae p...	0.0	[1..496]	[1..496]
gi\|77380342, gi\|... - gi\|77456339\|ref\|YP_345844.1\| Acetyl-CoA hydrolase [Pseudomonas fluorescens Pf0-1], gi\|77380342\|gb\|AB...	0.0	[1..496]	[1..496]

Back

Predicted Domain #1

Region A:
Residues: [1-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRDRVRLPS LLDKVMSAAE AADLIQDGMT VGMSGFTRAG EAKAVPQALA MRAKERPLRI  60
   61 SLMTGASLGN DLDKQLTEAG VLARRMPFQV DSTLRKAINA GEVMFIDQHL SETVEQLRNH 120
  121 QLKLPDIAVI EAAAITEQGH IVPTTSVGNS ASFAIFAKQV IVEINLAHST NLEGLHDIYI 180
  181 PTYRPTRTPI PLTRVDDRIG STAIPIPPEK IVAIVINDQP DSPSTVLPPD GETQAIANHL 240
  241 IDFFKREVDA GRMSNSLGPL QAGIGSIANA VMCGLIESPF ENLTMYSEVL QDSTFDLIDA 300
  301 GKLRFASGSS ITLSPRRNAD VFGNLERYKD KLVLRPQEIS NHPEVVRRLG IIGINTALEF 360
  361 DIYGNVNSTH VGGTKMMNGI GGSGDFARNA HLAIFVTKSI AKGGNISSVV PMVSHVDHTE 420
  421 HDVDILVTEQ GLADLRGLAP RERARVIIEN CVHPSYQAPL LDYFEAACAK GGHTPHLLRE 480
  481 ALAWHLNLEE RGHMLAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	148.0
Match:	2g39A
Description:	No description for 2g39A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.31732715713197	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	0.768278195752223	bayes_pls_golite062009
acetyl-CoA hydrolase activity	0.73627161929319	bayes_pls_golite062009
CoA hydrolase activity	0.54582496937776	bayes_pls_golite062009
ribose-5-phosphate isomerase activity	0.433191582711132	bayes_pls_golite062009
nucleic acid binding	0.209863122534786	bayes_pls_golite062009
CoA-transferase activity	0.0320953696548698	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: