YRC Public Data Repository - Protein Structure Prediction

Protein:	NQOR_ECO55
Organism:	Escherichia coli 55989
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NQOR_ECO55.

Description	E-value	Query Range	Subject Range
NQOR_ALKEH - NAD(P)H dehydrogenase (quinone) OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLH...	191.0	[0..1]	[198..1]
WRBA_SALTI - Flavoprotein wrbA OS=Salmonella typhi GN=wrbA PE=3 SV=3 NQOR_SALTI - NAD(P)H dehydrogenase (quinone) OS=Salmonella typhi GN=STY1155 PE=3 SV=3 gi\|213163116 - gi\|213163116\|ref\|ZP_03348826.1\| TrpR binding protein WrbA [Salmonella enterica subsp. enterica serov... gi\|29142232, gi\|... - gi\|29142232\|ref\|NP_805574.1\| TrpR binding protein WrbA [Salmonella enterica subsp. enterica serovar ... gi\|16759997 - gi\|16759997\|ref\|NP_455614.1\| TrpR binding protein WrbA [Salmonella enterica subsp. enterica serovar ... gi\|214003496 - gi\|214003496\|ref\|ZP_03414231.1\| TrpR binding protein WrbA [Salmonella enterica subsp. enterica serov... gi\|213428508 - gi\|213428508\|ref\|ZP_03361258.1\| TrpR binding protein WrbA [Salmonella enterica subsp. enterica serov... gi\|213416804 - gi\|213416804\|ref\|ZP_03349948.1\| TrpR binding protein WrbA [Salmonella enterica subsp. enterica serov... gi\|213648756 - gi\|213648756\|ref\|ZP_03378809.1\| TrpR binding protein WrbA [Salmonella enterica subsp. enterica serov... gi\|213579930 - gi\|213579930\|ref\|ZP_03361756.1\| TrpR binding protein WrbA [Salmonella enterica subsp. enterica serov...	191.0	[0..1]	[198..1]
NQOR_SALPA - NAD(P)H dehydrogenase (quinone) OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=SPA1731 PE=... NQOR_SALPK - NAD(P)H dehydrogenase (quinone) OS=Salmonella paratyphi A (strain AKU_12601) GN=SSPA1609 PE=3 SV=1 WRBA_SALPA - Flavoprotein wrbA OS=Salmonella paratyphi A GN=wrbA PE=3 SV=3	191.0	[0..1]	[198..1]
NQOR_SHIDS - NAD(P)H dehydrogenase (quinone) OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=SDY_0980 PE=3 S...	191.0	[0..1]	[198..1]
NQOR_SALTY - NAD(P)H dehydrogenase (quinone) OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=S... lcl\|NC_016856.1_... - [gene=wraB] [protein=TrpR binding protein WrbA] [protein_id=YP_005236860.1] [location=complement(116... WRBA_SALTY - Flavoprotein wrbA OS=Salmonella typhimurium GN=wrbA PE=3 SV=3 WRBA_SALTY - Flavoprotein wrbA OS=Salmonella typhimurium GN=wrbA PE=3 SV=3 gi\|205328348, gi... - gi\|205328348\|gb\|EDZ15112.1\| NAD(P)H:quinone oxidoreductase, type IV [Salmonella enterica subsp. ente... gi\|167552614, gi... - gi\|205322772\|gb\|EDZ10611.1\| NAD(P)H:quinone oxidoreductase, type IV [Salmonella enterica subsp. ente... NQOR_SALPC - NAD(P)H dehydrogenase (quinone) OS=Salmonella paratyphi C (strain RKS4594) GN=SPC_2630 PE=3 SV=1 gi\|197241393, gi... - gi\|197263138\|ref\|ZP_03163212.1\| NAD(P)H:quinone oxidoreductase, type IV [Salmonella enterica subsp. ...	190.0	[0..1]	[198..1]
gi\|189001245, gi... - gi\|189001245\|gb\|EDU70231.1\| NAD(P)H:quinone oxidoreductase, type IV [Escherichia coli O157:H7 str. E... gi\|189372761, gi... - gi\|189372761\|gb\|EDU91177.1\| NAD(P)H:quinone oxidoreductase, type IV [Escherichia coli O157:H7 str. E... gi\|168800637, gi... - gi\|189377075\|gb\|EDU95491.1\| NAD(P)H:quinone oxidoreductase, type IV [Escherichia coli O157:H7 str. E... gi\|195935261 - gi\|195935261\|ref\|ZP_03080643.1\| TrpR binding protein WrbA [Escherichia coli O157:H7 str. EC4024] gi\|168747377, gi... - gi\|188017979\|gb\|EDU56101.1\| NAD(P)H:quinone oxidoreductase, type IV [Escherichia coli O157:H7 str. E... gi\|168754327, gi... - gi\|189358181\|gb\|EDU76600.1\| NAD(P)H:quinone oxidoreductase, type IV [Escherichia coli O157:H7 str. E... gi\|168767504, gi... - gi\|189363095\|gb\|EDU81514.1\| NAD(P)H:quinone oxidoreductase, type IV [Escherichia coli O157:H7 str. E... gi\|187770352, gi... - gi\|187770352\|gb\|EDU34196.1\| NAD(P)H:quinone oxidoreductase, type IV [Escherichia coli O157:H7 str. E... gi\|7649820\|dbj\|B... - trp repressor binding protein [Escherichia coli O157:H7] NQOR_ECO57 - NAD(P)H dehydrogenase (quinone) OS=Escherichia coli O157:H7 GN=Z1423/Z1504 PE=5 SV=3 gi\|208805753, gi... - gi\|208805753\|ref\|ZP_03248090.1\| NAD(P)H:quinone oxidoreductase, type IV [Escherichia coli O157:H7 st... gi\|208815043, gi... - gi\|208815043\|ref\|ZP_03256222.1\| NAD(P)H:quinone oxidoreductase, type IV [Escherichia coli O157:H7 st... gi\|208822086, gi... - gi\|208822086\|ref\|ZP_03262405.1\| NAD(P)H:quinone oxidoreductase, type IV [Escherichia coli O157:H7 st... NQOR_ECO5E - NAD(P)H dehydrogenase (quinone) OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ECH74115_1242 ...	188.0	[0..1]	[198..1]
gi\|148264 - gi\|148264\|gb\|AAA24759.1\| trp repressor binding protein	187.0	[0..1]	[198..1]
NQOR_SHISS - NAD(P)H dehydrogenase (quinone) OS=Shigella sonnei (strain Ss046) GN=SSON_1014 PE=3 SV=1	186.0	[0..2]	[198..5]
NQOR_PHOLL - NAD(P)H dehydrogenase (quinone) OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP... WRBA_PHOLL - Flavoprotein wrbA OS=Photorhabdus luminescens subsp. laumondii GN=wrbA PE=3 SV=1	185.0	[0..1]	[197..1]
NQOR_THICR - NAD(P)H dehydrogenase (quinone) OS=Thiomicrospira crunogena (strain XCL-2) GN=Tcr_1010 PE=3 SV=1	185.0	[0..1]	[198..1]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVLVLYYS MYGHIETMAR AVAEGASKVD GAEVVVKRVP ETMPPQLFEK AGGKTQTAPV  60
   61 ATPQELADYD AIIFGTPTRF GNMSGQMRTF LDQTGGLWAS GALYGKLASV FSSTGTGGGQ 120
  121 EQTITSTWTT LAHHGMVIVP IGYAAQELFD VSQVRGGTPY GATTIAGGDG SRQPSQEELS 180
  181 IARYQGEYVA GLAVKLNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	1zwkA
Description:	Structure of WrbA from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.32880196921974	bayes_pls_golite062009
binding	1.54529414520518	bayes_pls_golite062009
oxidoreductase activity	1.2698167260481	bayes_pls_golite062009
catalytic activity	0.275631658558537	bayes_pls_golite062009
protein binding	0.191220795572558	bayes_pls_golite062009
transcription factor binding	0.0852528568191628	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: