YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|172079897, gi...
Organism:	Bacillus anthracis str. A0174
Length:	386 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|172079897, gi....

Description	E-value	Query Range	Subject Range
gi\|229329559, gi... - gi\|229499501\|ref\|ZP_04393185.1\| succinyl-CoA synthetase, beta subunit [Geobacillus sp. Y412MC52], gi... gi\|220708091, gi... - gi\|221088098\|ref\|ZP_03557632.1\| succinyl-CoA synthetase, beta subunit [Geobacillus sp. Y412MC61], gi... SUCC_GEOKA - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus (strain HTA426) GN=sucC P... SUCC_GEOKA - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus GN=sucC PE=3 SV=1	3.0E-95	[1..385]	[1..385]
gi\|89098658, gi\|... - gi\|89098658\|ref\|ZP_01171540.1\| succinyl-CoA synthetase subunit beta [Bacillus sp. NRRL B-14911], gi\|...	2.0E-93	[1..386]	[1..386]
gi\|228986979, gi... - gi\|228986979\|ref\|ZP_04147105.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus thuringiens... gi\|228812075, gi... - gi\|228947555\|ref\|ZP_04109845.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus thuringiens... gi\|229123350, gi... - gi\|229123350\|ref\|ZP_04252554.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus cereus 95/8... gi\|229092878, gi... - gi\|229092878\|ref\|ZP_04224012.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus cereus Rock... gi\|228597252, gi... - gi\|229186076\|ref\|ZP_04313245.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus cereus BGSC... gi\|229140478, gi... - gi\|229140478\|ref\|ZP_04269033.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus cereus BDRD... gi\|229197946, gi... - gi\|229197946\|ref\|ZP_04324661.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus cereus m129... gi\|47553002, gi\|... - gi\|47570337\|ref\|ZP_00240982.1\| succinyl-CoA synthetase beta chain [Bacillus cereus G9241], gi\|475530... SUCC_BACHK - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus thuringiensis subsp. konkukian GN=sucC PE... SUCC_BACCZ - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain ZK / E33L) GN=sucC PE=3 SV... SUCC_BACC7 - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain AH187) GN=sucC PE=3 SV=1 SUCC_BACAH - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus thuringiensis (strain Al Hakam) GN=sucC P... SUCC_BACCQ - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain Q1) GN=sucC PE=3 SV=1 SUCC_BACC1 - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=s... SUCC_BACHK - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus thuringiensis subsp. konkukian (strain 97... SUCC_BACC3 - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain 03BB102) GN=sucC PE=3 SV=1 gi\|228935150, gi... - gi\|228935150\|ref\|ZP_04097977.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus thuringiens... gi\|228843052, gi... - gi\|228916473\|ref\|ZP_04080039.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus thuringiens...	2.0E-93	[1..386]	[1..386]
SUCC_BACLD - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13...	4.0E-93	[1..385]	[1..385]
SUCC_BACCR - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM ...	5.0E-93	[1..386]	[1..386]
SUCC_BACHD - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus halodurans GN=sucC PE=3 SV=1 SUCC_BACHD - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 181...	2.0E-92	[1..385]	[1..385]
SUCC_LEGPC - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Legionella pneumophila (strain Corby) GN=sucC PE=3... SUCC_LEGPL - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Legionella pneumophila (strain Lens) GN=sucC PE=3 ...	1.0E-91	[1..385]	[1..385]
SUCC_BACSU - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus subtilis GN=sucC PE=1 SV=2 SUCC_BACSU - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus subtilis (strain 168) GN=sucC PE=1 SV=2 gi\|221313809 - gi\|221313809\|ref\|ZP_03595614.1\| succinyl-CoA synthetase subunit beta [Bacillus subtilis subsp. subti... gi\|221318733 - gi\|221318733\|ref\|ZP_03600027.1\| succinyl-CoA synthetase subunit beta [Bacillus subtilis subsp. subti... gi\|221323004 - gi\|221323004\|ref\|ZP_03604298.1\| succinyl-CoA synthetase subunit beta [Bacillus subtilis subsp. subti...	2.0E-91	[1..385]	[1..385]
SUCC_RHORT - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1... gi\|48764980 - ref\|ZP_00269531.1\| COG0045: Succinyl-CoA synthetase, beta subunit [Rhodospirillum rubrum]	2.0E-91	[1..385]	[1..395]
gi\|52840778, gi\|... - gi\|52840778\|ref\|YP_094577.1\| succinyl CoA synthetase beta chain [Legionella pneumophila subsp. pneum...	2.0E-91	[1..385]	[20..404]

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Predicted Domain #1

Region A:
Residues: [1-386]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIHEYQGKA VLRSYGVSVP NGKVAFTVEE AVEAAKELGT DVCVVKAQIH AGGRGKAGGV  60
   61 KVAKNLDEVR TYAESILGTT LVTHQTGPEG KEVKRLLIEE GCDIKKEYYV GLVLDRATSQ 120
  121 VVLMASEEGG TEIEEVAEKT PEKIFKEYID PAVGLQGFQA RRIAFNINIP KELVGQAVKF 180
  181 MMGLYRAFIE KDCSIAEINP LVTTGDGKVM ALDAKLNFDS NALYRHKDIL ELRDLDEEDA 240
  241 KEIEASKYDL NYIPLDGNIG CMVNGAGLAM ATMDIIKHYH GDPANFLDVG GGATAEKVTE 300
  301 AFKIILSDKN VKGIFVNIFG GIMKCDVIAE GVIEATKQVG LELPLVVRLE GTNVELGKKI 360
  361 LNESGLNIVA AESMTDGAQK IVSLVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.154902
Match:	1cqiB
Description:	Succinyl-CoA synthetase, beta-chain, C-terminal domain; Succinyl-CoA synthetase, beta-chain, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate-CoA ligase (GDP-forming) activity	9.38156037766008	bayes_pls_golite062009
succinate-CoA ligase activity	9.37213380498009	bayes_pls_golite062009
CoA-ligase activity	8.19630272128785	bayes_pls_golite062009
acid-thiol ligase activity	7.98453115335343	bayes_pls_golite062009
succinate-CoA ligase (ADP-forming) activity	7.27105019329796	bayes_pls_golite062009
ligase activity, forming carbon-sulfur bonds	7.23103788464777	bayes_pls_golite062009
ligase activity	3.25077459445999	bayes_pls_golite062009
ATP citrate synthase activity	3.09252003125984	bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	3.07329302783164	bayes_pls_golite062009
catalytic activity	2.5009559386228	bayes_pls_golite062009
CoA carboxylase activity	1.75094739650292	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	1.59015373957506	bayes_pls_golite062009
acetyl-CoA carboxylase activity	1.29064883699349	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.15639517822408	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.992008268375695	bayes_pls_golite062009
binding	0.346654244533873	bayes_pls_golite062009
biotin carboxylase activity	0.0172732430077291	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: