YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167418783, gi...
Organism:	Yersinia pestis biovar Orientalis str. MG05-1020
Length:	791 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167418783, gi....

Description	E-value	Query Range	Subject Range
gi\|186700282, gi... - gi\|186897256\|ref\|YP_001874368.1\| RNA-binding S1 domain-containing protein [Yersinia pseudotuberculos... gi\|51591338, gi\|... - gi\|51598056\|ref\|YP_072247.1\| hypothetical protein YPTB3766 [Yersinia pseudotuberculosis IP 32953], g... Q664K3\|Q664K3_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis	0.0	[1..791]	[1..791]
gi\|153950179, gi... - gi\|77631116\|ref\|ZP_00793702.1\| COG2183: Transcriptional accessory protein [Yersinia pseudotuberculos...	0.0	[1..791]	[1..791]
gi\|36783653, gi\|... - gi\|37524230\|ref\|NP_927574.1\| hypothetical protein plu0210 [Photorhabdus luminescens subsp. laumondii...	0.0	[1..791]	[1..775]
gi\|77962670, gi\|... - gi\|77962670\|ref\|ZP_00826487.1\| COG2183: Transcriptional accessory protein [Yersinia mollaretii ATCC ...	0.0	[1..791]	[1..788]
gi\|77978697, gi\|... - gi\|77978697\|ref\|ZP_00834123.1\| COG2183: Transcriptional accessory protein [Yersinia intermedia ATCC ...	0.0	[1..791]	[1..792]
gi\|218555956, gi... - gi\|218555956\|ref\|YP_002388869.1\| transcriptional accessory protein [Escherichia coli IAI1], gi\|21836... gi\|190902086, gi... - gi\|75228938\|ref\|ZP_00715530.1\| COG2183: Transcriptional accessory protein [Escherichia coli B7A], gi... gi\|209920863, gi... - gi\|209920863\|ref\|YP_002294947.1\| hypothetical protein ECSE_3672 [Escherichia coli SE11], gi\|20991412... gi\|157162884, gi... - gi\|75197338\|ref\|ZP_00707408.1\| COG2183: Transcriptional accessory protein [Escherichia coli HS], gi\|... gi\|187730372, gi... - gi\|75179975\|ref\|ZP_00699962.1\| COG2183: Transcriptional accessory protein [Shigella boydii BS512], g...	0.0	[1..758]	[2..759]
gi\|75188181, gi\|... - gi\|75188181\|ref\|ZP_00701448.1\| COG2183: Transcriptional accessory protein [Escherichia coli E24377A]... gi\|226839080, gi... - gi\|254038574\|ref\|ZP_04872630.1\| yhgF [Escherichia sp. 1_1_43], gi\|226839080\|gb\|EEH71103.1\| yhgF [Esc... gi\|192932460, gi... - gi\|75260304\|ref\|ZP_00731572.1\| COG2183: Transcriptional accessory protein [Escherichia coli E22], gi... gi\|194427009, gi... - gi\|75211773\|ref\|ZP_00711837.1\| COG2183: Transcriptional accessory protein [Escherichia coli B171], g...	0.0	[1..758]	[2..759]
gi\|110616787, gi... - gi\|110807239\|ref\|YP_690759.1\| hypothetical protein SFV_3412 [Shigella flexneri 5 str. 8401], gi\|1106...	0.0	[1..758]	[2..759]
EG12932 - putative transcriptional accessory protein / Predicted transcription accessory factor, function unkn... gi\|170082924, gi... - gi\|170082924\|ref\|YP_001732244.1\| transcriptional accessory protein [Escherichia coli str. K-12 subst... gi\|89110603, gi\|... - gi\|89110603\|ref\|AP_004383.1\| predicted transcriptional accessory protein [Escherichia coli str. K-12... gi\|238902498, gi... - gi\|238902498\|ref\|YP_002928294.1\| putative transcriptional accessory protein [Escherichia coli BW2952... YHGF_ECOLI - Protein yhgF - Escherichia coli EG12932 - putative transcriptional accessory protein / Predicted transcription accessory factor, function unkn... gi\|253322808, gi... - gi\|253771764\|ref\|YP_003034595.1\| RNA binding S1 domain protein [Escherichia coli BL21(DE3)], gi\|2533...	0.0	[1..758]	[2..759]
gi\|83571672, gi\|... - gi\|83571672\|ref\|ZP_00923112.1\| COG2183: Transcriptional accessory protein [Shigella dysenteriae 1012...	0.0	[1..758]	[2..759]

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Predicted Domain #1

Region A:
Residues: [1-791]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEPLSRIIA SELQARPEQV ISAIRLLDEG NTVPFISRYR KEVTGGLDDI QLRQLESRLG  60
   61 YLRELEDRRQ TILKSIEDQG KLTDQLAGAI NATLSKTELE DLYLPYKPKR RTRGQIAIEA 120
  121 GLEPLAERLW QDPQQDPEHT ALAYVDADKG VADTKAALDG ARYILMERFA EDATLLAKVR 180
  181 QYLWKNAHLV SKVVEGKEQE GAKFRDYFDH HEPIAQVPSH RALAMFRGRN EGVLQLALDP 240
  241 DPQFDEPPRE SQGEQIIINH LDLRLNNAPA DGWRKAVVNW TWRIKVLLHL ETELMSTLRE 300
  301 RAEDEAINVF ARNMQDLLMA APAGMRATMG LDPGLRTGVK VAVVDATGKL VAFDTIYPHT 360
  361 GQAAKAAAVV AALCIKHQVE LVAIGNGTAS RETERFFVEL QQQYPAVTAQ KVIVSEAGAS 420
  421 VYSASELASQ EFPDLDVSIR GAVSIARRLQ DPLAELVKID PKSIGVGQYQ HDVSQSQLAK 480
  481 KLDAVVEDCV NAVGVDLNTA SVPLLTRVAG LTRMMAQNIV NWRDENGRFR NREQLLKVSR 540
  541 LGPKAFEQCA GFLRINHGDN PLDASTVHPE AYPVVERILA ATEQALQDLM GNANALRNLN 600
  601 ARDFTTERFG VPTVTDILRE LEKPGRDPRS EFKTATFAEG VETLNDLTPG MILEGAVTNV 660
  661 TNFGAFVDIG VHQDGLVHIS SLADKFVDDP HKVVKAGDIV KVKVMEVDLQ RKRIALTMRL 720
  721 DEQPGETHSR RSNNGTGSER TNNDNRGVNR PHNDAKGHNA PNRAPAKGRS DSSSAGNSAM 780
  781 SDALAAAFKK R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2oceA
Description:	No description for 2oceA was found.

Predicted functions:

Term	Confidence	Notes
nuclease activity	1.80465910244067	bayes_pls_golite062009
catalytic activity	1.25233849524628	bayes_pls_golite062009
binding	0.976779918085478	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.871378999384944	bayes_pls_golite062009
transcription regulator activity	0.68649942036452	bayes_pls_golite062009
ribonuclease activity	0.567315548679559	bayes_pls_golite062009
exonuclease activity	0.550209133970558	bayes_pls_golite062009
four-way junction helicase activity	0.419570002710614	bayes_pls_golite062009
nucleic acid binding	0.348817191795884	bayes_pls_golite062009
endonuclease activity	0.164428265680495	bayes_pls_golite062009
DNA binding	0.163320242518978	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: