YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|13096635, gi\|...
Organism:	Escherichia coli
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13096635, gi|....

Description	E-value	Query Range	Subject Range
gi\|18144436, gi\|... - gi\|18309758\|ref\|NP_561692.1\| transcriptional regulator [Clostridium perfringens str. 13], gi\|1814443...	193.0	[0..1]	[210..18]
gi\|110799775, gi... - gi\|110799775\|ref\|YP_695229.1\| Crp/FNR family transcriptional regulator [Clostridium perfringens ATCC... gi\|170714238, gi... - gi\|170714238\|gb\|EDT26420.1\| transcriptional regulator, Crp/Fnr family [Clostridium perfringens CPE s...	189.0	[0..1]	[208..18]
gi\|110683382, gi... - gi\|110802881\|ref\|YP_698080.1\| Crp/FNR family transcriptional regulator [Clostridium perfringens SM10...	188.0	[0..1]	[208..18]
gi\|119944168, gi... - gi\|119944168\|ref\|YP_941848.1\| cAMP-regulatory protein [Psychromonas ingrahamii 37], gi\|119862772\|gb\|...	188.0	[0..8]	[210..8]
gi\|2190360 - gi\|2190360\|emb\|CAA61609.1\| CRP regulatory protein [Erwinia chrysanthemi]	188.0	[0..8]	[210..8]
gi\|83572589, gi\|... - gi\|83589675\|ref\|YP_429684.1\| Crp/FNR family transcriptional regulator [Moorella thermoacetica ATCC 3...	188.0	[0..1]	[207..11]
gi\|18032026 - gi\|18032026\|gb\|AAL51151.1\| cyclic AMP receptor protein [Yersinia enterocolitica] gi\|238788937, gi... - gi\|77975018\|ref\|ZP_00830555.1\| COG0664: cAMP-binding proteins - catabolite gene activator and regula... gi\|123444130, gi... - gi\|123444130\|ref\|YP_001008100.1\| cAMP-regulatory protein [Yersinia enterocolitica subsp. enterocolit... gi\|25300724 - pir\|\|AC0022 cAMP-regulatory protein crp [imported] - Yersinia pestis (strain CO92) gi\|238715936, gi... - gi\|77958268\|ref\|ZP_00822304.1\| COG0664: cAMP-binding proteins - catabolite gene activator and regula... gi\|45440035, gi\|... - gi\|45440035\|ref\|NP_991574.1\| cAMP-regulatory protein [Yersinia pestis biovar Microtus str. 91001], g... gi\|22127826, gi\|... - gi\|22127826\|ref\|NP_671249.1\| cAMP-regulatory protein [Yersinia pestis KIM], gi\|21960959\|gb\|AAM87500.... gi\|15978278, gi\|... - gi\|218927384\|ref\|YP_002345259.1\| cAMP-regulatory protein [Yersinia pestis CO92], gi\|16120516\|ref\|NP_... gi\|51598019, gi\|... - gi\|51598019\|ref\|YP_072210.1\| cAMP-regulatory protein [Yersinia pseudotuberculosis IP 32953], gi\|5159... gi\|77634615, gi\|... - gi\|77634615\|ref\|ZP_00796712.1\| COG0664: cAMP-binding proteins - catabolite gene activator and regula... gi\|238698058, gi... - gi\|238763756\|ref\|ZP_04624715.1\| hypothetical protein ykris0001_23360 [Yersinia kristensenii ATCC 336... gi\|152960162, gi... - gi\|77631153\|ref\|ZP_00793739.1\| COG0664: cAMP-binding proteins - catabolite gene activator and regula... gi\|238758738, gi... - gi\|238758738\|ref\|ZP_04619912.1\| hypothetical protein yaldo0001_31510 [Yersinia aldovae ATCC 35236], ... Q664P0\|Q664P0_YERPS - CAMP-regulatory protein - Yersinia pseudotuberculosis gi\|238751109, gi... - gi\|238751109\|ref\|ZP_04612604.1\| hypothetical protein yrohd0001_12920 [Yersinia rohdei ATCC 43380], g... gi\|229842114, gi... - gi\|229842114\|ref\|ZP_04462269.1\| cyclic AMP receptor protein [Yersinia pestis biovar Orientalis str. ... gi\|229696398, gi... - gi\|229840032\|ref\|ZP_04460191.1\| cyclic AMP receptor protein [Yersinia pestis biovar Orientalis str. ... gi\|229706412, gi... - gi\|229836344\|ref\|ZP_04456511.1\| cyclic AMP receptor protein [Yersinia pestis Pestoides A], gi\|229706... gi\|165920175, gi... - gi\|165927899\|ref\|ZP_02223731.1\| catabolite gene activator [Yersinia pestis biovar Orientalis str. F1... gi\|165990489, gi... - gi\|166010399\|ref\|ZP_02231297.1\| catabolite gene activator [Yersinia pestis biovar Antiqua str. E1979... gi\|166205444, gi... - gi\|166213146\|ref\|ZP_02239181.1\| catabolite gene activator [Yersinia pestis biovar Antiqua str. B4200... gi\|167051444, gi... - gi\|167398940\|ref\|ZP_02304464.1\| catabolite gene activator [Yersinia pestis biovar Antiqua str. UG05-... gi\|167419214, gi... - gi\|167419214\|ref\|ZP_02310967.1\| catabolite gene activator [Yersinia pestis biovar Orientalis str. MG... gi\|165940015, gi... - gi\|89102998\|ref\|ZP_01175596.1\| COG0664: cAMP-binding proteins - catabolite gene activator and regula... gi\|108809288, gi... - gi\|108809288\|ref\|YP_653204.1\| cAMP-regulatory protein [Yersinia pestis Antiqua], gi\|108781201\|gb\|ABG... gi\|229904586, gi... - gi\|229904586\|ref\|ZP_04519697.1\| cyclic AMP receptor protein [Yersinia pestis Nepal516], gi\|229678704... gi\|149290182, gi... - gi\|150260774\|ref\|ZP_01917502.1\| cAMP-regulatory protein [Yersinia pestis CA88-4125], gi\|149290182\|gb... gi\|167425691, gi... - gi\|167425691\|ref\|ZP_02317444.1\| catabolite gene activator [Yersinia pestis biovar Mediaevalis str. K... gi\|170022509, gi... - gi\|170022509\|ref\|YP_001719014.1\| cAMP-regulatory protein [Yersinia pseudotuberculosis YPIII], gi\|169... gi\|186897215, gi... - gi\|186897215\|ref\|YP_001874327.1\| cAMP-regulatory protein [Yersinia pseudotuberculosis PB1/+], gi\|186... gi\|145597421, gi... - gi\|145597421\|ref\|YP_001161496.1\| cAMP-regulatory protein [Yersinia pestis Pestoides F], gi\|145209117...	187.0	[0..8]	[210..8]
tr\|S5EZW5\|S5EZW5... - Transcriptional regulator OS=Serratia liquefaciens ATCC 27592 GN=M495_23095 PE=4 SV=1 gi\|54208736 - gi\|54208736\|gb\|AAV31126.1\| cAMP-regulatory protein [Yersinia ruckeri] gi\|157324576, gi... - gi\|157372812\|ref\|YP_001480801.1\| cAMP-regulatory protein [Serratia proteamaculans 568], gi\|157324576... gi\|238754144, gi... - gi\|238754144\|ref\|ZP_04615502.1\| hypothetical protein yruck0001_27450 [Yersinia ruckeri ATCC 29473], ... gi\|50122984, gi\|... - gi\|50122984\|ref\|YP_052151.1\| cAMP-regulatory protein [Pectobacterium atrosepticum SCRI1043], gi\|4961...	187.0	[0..8]	[210..8]
gi\|52308041, gi\|... - gi\|52425989\|ref\|YP_089126.1\| cAMP-regulatory protein [Mannheimia succiniciproducens MBEL55E], gi\|523...	186.0	[0..9]	[210..26]
gi\|238792910, gi... - gi\|77978196\|ref\|ZP_00833628.1\| COG0664: cAMP-binding proteins - catabolite gene activator and regula...	186.0	[0..8]	[210..8]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLGKPQTDP TLEWFLSHCH IHKYPSKSTL IHQGEKAETL YYIVKGSVAV LIKDEEGKEM  60
   61 ILSYLNQGDF IGELGLFEEG QERSAWVRAK TACEVAEISY KKFRQLIQVN PDILMRLSAQ 120
  121 MARRLQVLAE KVGNLAFLDV TGRIAQTLLN LAKQPDAMTH PDGMQIKITR QEIGQIVGCS 180
  181 RETVGRILKM LEDQNLISAH GKTIVVYGTR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.522879
Match:	1i5zA
Description:	Catabolite gene activator protein (CAP), C-terminal domain; Catabolite gene activator protein, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	1.00625548877971	bayes_pls_golite062009
binding	0.891226539481379	bayes_pls_golite062009
nucleic acid binding	0.59306579636505	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
DNA binding	0.47798148720399	bayes_pls_golite062009
transcription factor activity	0.159026311884013	bayes_pls_golite062009
protein binding	0.094542444184087	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: