YRC Public Data Repository - Protein Structure Prediction

Protein:	FY_ARATH
Organism:	Arabidopsis thaliana
Length:	647 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FY_ARATH.

Description	E-value	Query Range	Subject Range
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	716.0	[0..1]	[642..753]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	697.0	[0..47]	[627..1170]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	694.0	[0..50]	[629..865]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	676.0	[0..47]	[627..1042]
gi\|110168368, gi... - gi\|71673858\|ref\|ZP_00671606.1\| G-protein beta WD-40 repeat [Trichodesmium erythraeum IMS101], gi\|716...	671.0	[0..41]	[624..836]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	670.0	[0..39]	[629..638]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYAGGDMHRG SQMPQPPMMR QSSASSTNIN PDYHHPSGPF DPNVDSFGAK RMRKHTQRRA  60
   61 VDYTSTVVRY IQARTWQRDS RDRTTLQPTP AAAVDMLPTV AYSDN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [106-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSTSFAAKFV HASLNKNRCS INRVLWTPSG RRLITGSQSG EFTLWNGQSF NFEMILQAHD  60
   61 QPIRSMVWSH NENYMVSGDD GGTLKYWQNN MNNVKANKTA HKESIRDLSF C

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.30103
Match:	2gnqA
Description:	No description for 2gnqA was found.

Predicted Domain #3

Region A:
Residues: [217-589]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTDLKFCSCS DDTTVKVWDF TKCVDESSLT GHGWDVKSVD WHPTKSLLVS GGKDQLVKLW  60
   61 DTRSGRELCS LHGHKNIVLS VKWNQNGNWL LTASKDQIIK LYDIRTMKEL QSFRGHTKDV 120
  121 TSLAWHPCHE EYFVSGSSDG SICHWIVGHE NPQIEIPNAH DNSVWDLAWH PIGYLLCSGS 180
  181 NDHTTKFWCR NRPADNPRDV LMQNQGYNEQ GFGRQPDNFQ PSEASPIPGA FVPGLTRNEG 240
  241 TIPGIGIAMP FDASSQGDHK QPLPGSMALG APPLPPGPHP SLLGSGQQQG YQQQQQHQGH 300
  301 PQQMLPMPNM PHHQLPPSSH MPLHPHHLPR PMQMPPHGHM PPPSMPMSHQ MPGSMGMQGG 360
  361 MNPQMSQSHF MGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	2qxvA
Description:	No description for 2qxvA was found.

Predicted Domain #4

Region A:
Residues: [590-647]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSGVFQGQPN SGGPQMYPQG RGGFNRPQMI PGYNNPFQQQ QQPPLPPGPP PNNNQQHQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits