| Protein: | gi|3550985, gi|1... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 402 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3550985, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
375.0 | [0..10] | [386..534] |
|
Region A: Residues: [1-186] |
1 11 21 31 41 51
| | | | | |
1 MVLEATMICI DNSEWMRNGD YSPSRFQAQA DAVNLICGAK TQSNPENTVG VMTMAGKGVR 60
61 VLVTPTSDLG KILACMHGLE VGAEANLAAA IQVAQLALKH RQNKRQQQRI IAFIGSPVKY 120
121 DKKVLETIGK KLKKNNVALD IVDFGETDDD KPEKLEALIS AVNSSDSSHI VHVPPGENAL 180
181 SDVLIS
|
| Detection Method: |  |
| Confidence: | 16.154902 |
| Match: | 1n3yA |
| Description: | Integrin alpha-x beta2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 4.02098822555334 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.82496592594463 | bayes_pls_golite062009 |
| endopeptidase activity | 3.72596563304893 | bayes_pls_golite062009 |
| binding | 3.32950434867692 | bayes_pls_golite062009 |
| hydrolase activity | 2.72944528058473 | bayes_pls_golite062009 |
| protein binding | 1.4332924081006 | bayes_pls_golite062009 |
| nucleic acid binding | 1.41389987484225 | bayes_pls_golite062009 |
| DNA binding | 1.27751137443334 | bayes_pls_golite062009 |
| protein dimerization activity | 0.45109468643752 | bayes_pls_golite062009 |
| protein complex binding | 0.0341925447010603 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.0195372592716698 | bayes_pls_golite062009 |
|
Region A: Residues: [187-306] |
1 11 21 31 41 51
| | | | | |
1 TPIFTGEEGG SGFAASAAAA AATGAAGFEF DVDPNVDPEL ALALRLSMEE ERARQEAIAK 60
61 KAAEESSGAE NKDHASSSNA DSVMAEAEPA SNAADDKKDQ PKEDDDAQLL QQALAMSMEE 120
121
|
| Detection Method: | |
| Confidence: | 19.69897 |
| Match: | 1yx4A |
| Description: | Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [307-402] |
1 11 21 31 41 51
| | | | | |
1 GSSGAAAADA AMAEAAVDDQ DLALALQMSV QDAGGSSQSD MSKVFEDRSF VTSILNSLPG 60
61 VDPNDPSVKD LLASLHGQGE QEKKEDKSDK PEDEKK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
