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View Structure Prediction Details

Protein: PPR32_ARATH
Organism: Arabidopsis thaliana
Length: 809 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPR32_ARATH.

Description E-value Query
Range
Subject
Range
gi|54695180 - gi|54695180|dbj|BAD67155.1| PPR986-12 [Physcomitrella patens]
962.0 [0..2] [809..180]
gi|215768699, gi... - gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Jap...
901.0 [0..2] [809..72]
PP307_ARATH - Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
866.0 [0..3] [809..258]
gi|92876242 - gi|92876242|gb|ABE83958.1| Tetratricopeptide-like helical [Medicago truncatula]
862.0 [0..2] [809..110]

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Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQLVQFST VPQIPNPPSR HRHFLSERNY IPANVYEHPA ALLLERCSSL KELRQILPLV  60
   61 FKNGLYQEHF FQTKLVSLFC RYGSVDEAAR VFEPIDSKLN VLYHTMLKGF AKVSDLDKAL 120
  121 QFFVRMRYDD VEPVVYNFTY LLKVCGD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.522879
Match: 3cvqA
Description: No description for 3cvqA was found.

Predicted Domain #2
Region A:
Residues: [148-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAELRVGKEI HGLLVKSGFS LDLFAMTGLE NMYAKCRQVN EARKVFDRMP ERDLVSWNTI  60
   61 VAGYSQNGMA RMALEMVKSM CEENLKPSFI TIVSVLPAVS ALRLISVGKE IHGYAMRSGF 120
  121 DSLVNISTAL VDMYAKCGSL ETARQLFDGM LERNVVSWNS MIDAYVQNEN PKEAMLIFQK 180
  181 MLDE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.69897
Match: 2q7fA
Description: No description for 2q7fA was found.

Predicted Domain #3
Region A:
Residues: [332-717]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVKPTDVSVM GALHACADLG DLERGRFIHK LSVELGLDRN VSVVNSLISM YCKCKEVDTA  60
   61 ASMFGKLQSR TLVSWNAMIL GFAQNGRPID ALNYFSQMRS RTVKPDTFTY VSVITAIAEL 120
  121 SITHHAKWIH GVVMRSCLDK NVFVTTALVD MYAKCGAIMI ARLIFDMMSE RHVTTWNAMI 180
  181 DGYGTHGFGK AALELFEEMQ KGTIKPNGVT FLSVISACSH SGLVEAGLKC FYMMKENYSI 240
  241 ELSMDHYGAM VDLLGRAGRL NEAWDFIMQM PVKPAVNVYG AMLGACQIHK NVNFAEKAAE 300
  301 RLFELNPDDG GYHVLLANIY RAASMWEKVG QVRVSMLRQG LRKTPGCSMV EIKNEVHSFF 360
  361 SGSTAHPDSK KIYAFLEKLI CHIKEA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 2gw1A
Description: No description for 2gw1A was found.

Predicted Domain #4
Region A:
Residues: [718-809]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYVPDTNLVL GVENDVKEQL LSTHSEKLAI SFGLLNTTAG TTIHVRKNLR VCADCHNATK  60
   61 YISLVTGREI VVRDMQRFHH FKNGACSCGD YW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle