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View Structure Prediction Details

Protein: PPR85_ARATH
Organism: Arabidopsis thaliana
Length: 638 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPR85_ARATH.

Description E-value Query
Range
Subject
Range
gi|54695180 - gi|54695180|dbj|BAD67155.1| PPR986-12 [Physcomitrella patens]
644.0 [0..1] [638..367]
gi|125586550, gi... - gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group], gi|1087086...
622.0 [0..4] [638..127]
gi|92884404 - gi|92884404|gb|ABE87347.1| Pancreatic ribonuclease; Tetratricopeptide-like helical [Medicago truncat...
613.0 [0..1] [638..82]
PP320_ARATH - Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana GN=DOT4 PE=2...
608.0 [0..2] [638..251]

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Predicted Domain #1
Region A:
Residues: [1-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVRSIIVSP PTTITYYHPM SIGLLVHPLS PHIPPASSPS ASTAGNHHQR IFSLAETCSD  60
   61 MSQLKQLHAF TLRTTYPEEP ATLFLYGKIL QLSSSFSDVN YAFRVFDSIE NHSSFMWNTL 120
  121 IRACAHDVSR KEEAFMLYRK MLERGESSPD KHTFPFVLKA CAYIFGFSEG KQVHCQIVKH 180
  181 GFGGDVYVNN GLIHLYGSCG CLDLARKVFD EMPERSLVSW NSMIDALVRF GEYDSALQLF 240
  241 REMQRSFEPD GYTMQSVLSA CAGLGSLSLG TWAHAFLLRK CDVDVAMDVL VKNSLIEMYC 300
  301 KCGSLRMAEQ VFQGMQKRDL ASWNAMILGF ATHGRAEEAM NFFDRMVDKR ENVRPNSVTF 360
  361 VGLLIACNHR GFVNKGRQYF DMMVRDYCIE 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 1w3bA
Description: The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [391-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PALEHYGCIV DLIARAGYIT EAIDMVMSMP MKPDAVIWRS LLDACCKKGA SVELSEEIAR  60
   61 NIIGTKEDNE SSNGNCSGAY VLLSRVYASA SRWNDVGIVR KLMSEHGIRK EPGCSSIEIN 120
  121 GISHEFFA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1elrA
Description: Hop
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [519-638]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDTSHPQTKQ IYQQLKVIDD RLRSIGYLPD RSQAPLVDAT NDGSKEYSLR LHSERLAIAF  60
   61 GLINLPPQTP IRIFKNLRVC NDCHEVTKLI SKVFNTEIIV RDRVRFHHFK DGSCSCLDYW 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle