| Protein: | PPR85_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 638 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPR85_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
644.0 | [0..1] | [638..367] |
|
|
622.0 | [0..4] | [638..127] |
|
|
613.0 | [0..1] | [638..82] |
|
|
608.0 | [0..2] | [638..251] |
|
Region A: Residues: [1-390] |
1 11 21 31 41 51
| | | | | |
1 MVVRSIIVSP PTTITYYHPM SIGLLVHPLS PHIPPASSPS ASTAGNHHQR IFSLAETCSD 60
61 MSQLKQLHAF TLRTTYPEEP ATLFLYGKIL QLSSSFSDVN YAFRVFDSIE NHSSFMWNTL 120
121 IRACAHDVSR KEEAFMLYRK MLERGESSPD KHTFPFVLKA CAYIFGFSEG KQVHCQIVKH 180
181 GFGGDVYVNN GLIHLYGSCG CLDLARKVFD EMPERSLVSW NSMIDALVRF GEYDSALQLF 240
241 REMQRSFEPD GYTMQSVLSA CAGLGSLSLG TWAHAFLLRK CDVDVAMDVL VKNSLIEMYC 300
301 KCGSLRMAEQ VFQGMQKRDL ASWNAMILGF ATHGRAEEAM NFFDRMVDKR ENVRPNSVTF 360
361 VGLLIACNHR GFVNKGRQYF DMMVRDYCIE
|
| Detection Method: |  |
| Confidence: | 36.69897 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [391-518] |
1 11 21 31 41 51
| | | | | |
1 PALEHYGCIV DLIARAGYIT EAIDMVMSMP MKPDAVIWRS LLDACCKKGA SVELSEEIAR 60
61 NIIGTKEDNE SSNGNCSGAY VLLSRVYASA SRWNDVGIVR KLMSEHGIRK EPGCSSIEIN 120
121 GISHEFFA
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1elrA |
| Description: | Hop |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [519-638] |
1 11 21 31 41 51
| | | | | |
1 GDTSHPQTKQ IYQQLKVIDD RLRSIGYLPD RSQAPLVDAT NDGSKEYSLR LHSERLAIAF 60
61 GLINLPPQTP IRIFKNLRVC NDCHEVTKLI SKVFNTEIIV RDRVRFHHFK DGSCSCLDYW 120
121
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.773 | c.61.1 | PRTase-like |
| View | Download | 0.772 | c.1.8 | (Trans)glycosidases |
| View | Download | 0.740 | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.739 | c.61.1 | PRTase-like |
| View | Download | 0.722 | c.10.2 | L domain-like |
| View | Download | 0.722 | c.10.2 | L domain-like |
| View | Download | 0.712 | c.56.5 | Zn-dependent exopeptidases |
| View | Download | 0.688 | c.10.2 | L domain-like |
| View | Download | 0.679 | c.10.1 | RNI-like |
| View | Download | 0.676 | c.98.2 | HPr kinase/phoshatase HprK N-terminal domain |
