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View Structure Prediction Details

Protein: gi|30696235
Organism: Arabidopsis thaliana
Length: 2603 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30696235.

Description E-value Query
Range
Subject
Range
gi|25373138, gi|... - pir||A96616 unknown protein F16M22.5 [imported] - Arabidopsis thaliana, gi|12321832|gb|AAG50951.1|AC...
2840.0 [0..1] [2603..1]
gi|68137455 - gi|68137455|gb|AAY85656.1| aberrant pollen transmission 1 [Zea mays]
2355.0 [0..19] [2603..45]
gi|108708171 - gi|108708171|gb|ABF95966.1| aberrant pollen transmission 1, putative, expressed [Oryza sativa (japon...
2312.0 [0..25] [2582..52]
gi|115387937, gi... - gi|115387937|ref|XP_001211474.1| conserved hypothetical protein [Aspergillus terreus NIH2624], gi|11...
1384.0 [0..655] [2575..651]

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Predicted Domain #1
Region A:
Residues: [1-277]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASPAKFFF GFLIVSIVLW MIFILCSRLF AWMLSRVLGA SVVFRVGGWK CLKDVVVKFK  60
   61 KGAIESVSAS EIKLSLRQSL VKLGVGFLSR DPKVQVLISD LEVVMRSSTS TTNLQKAKSH 120
  121 KPRTSGRGKW MVVANVARFL SVSVADMVVK TTKVIVEVKE LKLDINKDGG TKPNLYVKLN 180
  181 VLPILVHLCE SRIISDQSSN VSFECCPASQ ASSASPDRSA ATLFCDELSL SSEFGHDRAV 240
  241 GIVVRNVEVT SGDVILNFDE DSFPKSKQSS ASLRSDE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [278-521]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRTSATAASS AKKPHKEHQL VAALAKYSSS FPEKVSFSLP KLDVRCVNRE HDLLAENNIT  60
   61 GIQLRSVKSK SFEDTGESTR LDVQMELSEI HVFREADSSI LEIMKVDVVS FIYIPVQPVL 120
  121 PIRAEVDIKL GGTRCNLFIS RLQPWLRLHF LKKKKLVLQE KTHNLEKTKA ADMKAIMWTG 180
  181 TVSAPEMTVM LYGTEDIPLY HSSHVFANNV SSLGTAVHVE LGELNLHLAD EYQECFREHL 240
  241 FGIE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [522-648]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNSGSLMHIA KVSLDWGRRD RTSSDEVGFR SKLVLSVDVT GMGIYFSFKR VQSLIINALS  60
   61 FKALFKTLSV TGKKMNKTVS VQPSKGSGKG TRLVNINLER CCVNFCDDTG LDNTVIDDPK 120
  121 SVNYGSQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [649-881]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGRVSFSSLA DGTPRTASIL STAPEACKRL KYSVSLEISQ FSFCLNKDKL STQMELGRAK  60
   61 SIYQEYLEEH TPCSNVILFD MHNAKLVRRS GGLNEIDVCS LFSATHISLG WEPDVHLSFY 120
  121 ELFLRLRSLV YAQRHKEPES GCNKGISSVK DGGPSEKINQ SNSVNKQKKK ESMFAIDVET 180
  181 LTISAEVGDG VEVKLEAQSI FSENACIGVL LEGLMLAFNG SRVFKTTRMQ VSR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [882-1030]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPTATNLSDA VPVMTDGPWD WVVQGLDVHI CMPYKLQLRA IDDSIEEMLR GLKLISVAKG  60
   61 KHILSGKRES SKPKKSSPKF GRIKFCIRRL TADIEEEPIQ GWLDEHYQLV KKEACELAVR 120
  121 LKFLEDLIHK AGQSPKGAET SAVLDERKM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [1031-1127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFDGVEIDVE DPVAINKVKE EIHKRSFQSY YQACQGLAPS EGSGACREGF QAGFKPSAAR  60
   61 TSLLSVCATD FDLSLTAVHG GDAGLIEVLK KLDPICE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1128-1295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENDIPFSRLY GSNVYLNTGS LVVQLRNYTL PLLSGTSGKC EGRIVLAQQA TCFQPQISQD  60
   61 VFVGRWRKVK MFRSASGTTP PLKTYSDLRI HFEQGEVSFG VGYEPAFADI SYAFTVALRR 120
  121 ANLSHRNPDM VQVIKKERSL PWWDDMRNYV HGNITLSFSE SKWSVLAT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 4.60206
Match: PF10347.1
Description: No description for PF10347.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1296-1484]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDPYESLDQL QIVSGPIELK QSDGRVFVSA KDFKIKLSSL ESLISRHSLK VPVRASGAAF  60
   61 IEAPDFNLEV TMDWDCESGN SLNHYLYAFP AEGKPREKVF DPFRSTSLSL RWNFSLRPEK 120
  121 FHQSPSSTEH PTDVGTVYSS QDKPDSIPLA SPTMNLGAHD LAWILKFWGL NYYPPHKLRS 180
  181 FSRWPRFGV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1485-1677]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRAARSGNLS LDKVMTEFML RVDATPSLIK YMPWDSDDPA KGLTFNMAKL KYELCYSRGK  60
   61 QKYTFECKRD ALDLVYQGLD LHVPKAFINK DEHPCIPGSV QVLRKSTQDA LIDRVPSGKD 120
  121 HKRYEKHRDE GFLLSSDYFT IRRQAPKADP ERLLAWQEAG RRNLEMTYVR SEFENGSESD 180
  181 EHIRSDPSDD DGY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #10
Region A:
Residues: [1678-1735]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVVIADNCQR VFVYGLKLLW TIENRDAVWS FVGGISKAFE PPKPSPSRQY TQRKIHEE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #11
Region A:
Residues: [1736-1969]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQKESCPETH QGEMSRSSAS PGRNLPSSPS HSIKIEKSDD IGTVETIESE EEGTRHFMVN  60
   61 VIEPQFNLHS EEANGRFLLA AVSGRVLARS FHSIMRVGVE VIEQALGTGS VKIPECSPEM 120
  121 TWTRMEVSVM LEHVQAHVAP TDVDPGAGLQ WLPKIRRNSP KVKRTGALLE RVFMPCDMYF 180
  181 RYTRHKGGTP DLKVKPLKEL TFNSHNIIAT MTSRQFQVML DVLTNLLFAR LPKP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #12
Region A:
Residues: [1970-2049]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKSSLQCPTE DEDVEEEADE VVPYGVEEVE LAKINLEEKE RERKLLLDDI RKLSPCSDNM  60
   61 DDTHIEREGE LWMISTRRSI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #13
Region A:
Residues: [2050-2293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVQGLKKELT YAQKSRKAAS ASLRMALQKA AQLRIMEKEK NKSPSYAMCI SLQINKVVWS  60
   61 MLVDGKSFAE AEINDMIYDF DRDYKDIGVA RFTTKYFVVR NCLPNAKSDM LLSAWNPPPE 120
  121 WGKKVMLRVD AKQGAPKDAH YPLELFHVEI YPLRIHLTET MYRMMWEYFF PEEEQDSQSR 180
  181 QEVWKISTTA GSKRVKKGLV GHESSGHAIK DVEASRMSSS ALSASAAVQS QSNDDSVQKS 240
  241 NVIC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #14
Region A:
Residues: [2294-2389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRSSTGASAQ ELRRTSSFDR EENVAEPIAN ELVLQAHSCN VSSSIEQQED FSKQKVKEIK  60
   61 PVKSGRSSHE EKKAGKSHEE KKSRPRKMME FHNIKI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #15
Region A:
Residues: [2390-2528]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQVELLVTYE GSRFVVNDLK LLMDTFHRVE FTGTWRRLFS RVKKHIIWGV LKSVTGMQGK  60
   61 KFKDKSHNNR ESTDNDLNLS DNDQTGKPDQ QQVTWFKRQS DGAGDGFVTS IRGLFNTQRR 120
  121 KAKAFVLRTM RGEAENDFH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #16
Region A:
Residues: [2529-2603]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDWSDSDVEF SPFARQLTIT KAKRLIRRHT KKFRPRSQRG STSQQRESLP SSPIETTPFE  60
   61 SGYSSGSSPY EDFRE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle