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Protein Overview: gi|108708171

General Information:
Name(s) found: gi|108708171 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|108708171|gb|ABF95966.1| aberrant pollen transmission 1, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 2614 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVVGLVQLL VAFVVAWEAV ELVLRHGLLL SLFKFALAAA LAVAASFVAA LFLARVVAWV  60
   61 LRRTAKLSIG CRSFSFNYLR DITIKSPKGA VDSICVGEIR LGLRRPLTQL GFTILNHGPI 120
  121 LQLQISDLDI VLRQPAKSAK KKKPPPRKST STSPAKGKGK PKGQGKWRLI TNIASLLSLS 180
  181 IVELRFKAPK AALGIKDLKI DLSKTGGLDP ILNVEIHILP LFVQALEPDG IDNSTSVFSK 240
  241 LDWWVSGQYC SAMDTADCSS FLFEDIVLLC DLHQRGKGVG VKNLDLVIGP IVVNLEEKLF 300
  301 TKKKLSAPTV AEKTDEPAAD VKSDTKSEGS KLSSFNKKID LLPEKVSFNM SKLDLKFLPK 360
  361 DHGLLINNEI GGISVRFVKS QPHSDFGEAT HLQLETDVSD IHLLMDGATS VLEVVKVATV 420
  421 VSANIPIQST SPIRAEAGIK ISGSQCNIII SRIKPLIPLN SAQKKPTVPR ESSTQEKTPK 480
  481 EKLALDLVFT LSAPELTIVL YSLDDIPLYH CCLLSTHFAA SKTVNQGTEL HAVLGELKLI 540
  541 VAGKPQQSIK DRISGTLLQI SRSTIDLEQK VPDKDNCIDN PKSSLSLNIS GVRMNVCFYY 600
  601 LELLCTTAMS YKVFLKSIRP PKKRPAQGTS QKTTKNAKGA QIVKISVEQC AVLYVGDMIL 660
  661 EDMSIQDPKR VNFGSQGGHV VIINDADGSP RMAYVNSTSL PDHKHVNFFT SIEINQIGLC 720
  721 LNKEKQSVQV ELGRSRLTHK EDLLDDKPVE EVTLFDVQKV KFVRRSGGSN DSAVCALINV 780
  781 TEVAVWWEPD PYLELLEVAT RLKSIMHRIK HQNSANEIKD DTVYTDTLAK KDSLTEHGQQ 840
  841 EKPQKKQELV IAVDVESLKI SGELADGVEA MIHVGSIFSE NAKIGVLIEG LVVSFCGARI 900
  901 FKCSRTQLSR IPVSISDSLP DKKLQSAATC DWVIQCRNAY VCLPFRLQLR AIDDAVEDTL 960
  961 RAIKLISAAK MSVLFPEKKS SGSSSSSKKS KSKSTEFRYV RVIVRDLVAE IEEEPIQGWL1020
 1021 DEHIDLMKSV FNESTVRLDL LDELASVKHK DSPKAKLDGS SSEKNNGCPE VDGDAPGVCS1080
 1081 FEKLREDIYK QAFQSYYLAC QALKVSEGSG ACSSGFQSGF KMSTRRSSVM SVCAKDVDVS1140
 1141 LSKIDGGDEG MIGFIKTMDP VCAKNDIPFS RLYGSNFTLK AKSLSAYLRD YTFPLFSGTS1200
 1201 AKCNGRLVLA QQATCFQPQV RQDVYVGKWW RVNLLRSATG YTPPMKSYVD LPLHFQKGEV1260
 1261 SFGVGYEPVF ADVSYAFTCA LRRANLAKRW FFERPEPPRR ERSLPWWDDM RNYIHGKFRL1320
 1321 DFTKTTWHLP AKTSPYEKLD QMLITSDYLE ICYVDGYVSL YSKYLKVYLT SLESLAKKCS1380
 1381 LETPHHEVIP FLETPSFFMD IAIQWGCDSG NPMDHYIFAL PAEGKPRDKV LDPFRSTSLS1440
 1441 LKWSFSLKPS TTEPVKHQQN IQAVSNNSPT VNVGAHDFVW LMKWVNIFFL PPHKLRLFSR1500
 1501 FPRFGVPRFI RSGNLPLDRV MTEQFIRFDA SLLQINNMPL QVDDPANGLT LHFTKFRLEI1560
 1561 AFSRGKQIFT FDCKREPLDL VYQGIDLHLL KVSIKKTPEP SISKDAQVEN KSLHMKATDS1620
 1621 PGKNKTSSTE KSRDDGFFLY SDYFTIRKQT PKADAARLSA WQEDGRKKSE MPLAKSEFDG1680
 1681 GEESDHAQSG SDEEGFNVVV ADSCQRVFVY GLKILWNLEN RAAIVSWVGD LTQAFQPPKP1740
 1741 SPSRQYTQRK ILEKKQSTKE AEMSNDGTLS SSPLASQSSD PPKQTKSSEP PSSGPSKLES1800
 1801 TSTSDTAMKT SNSSDSEEEG TRHFMVNVVQ PQFNLHSEEA NGRFLLAAGS GRVLVRSFHS1860
 1861 IVHVGQEMFE KALGSSNVAI GETRPEMSWS RYEVSVMLEH VQAHVAPTDV DPGAGIQWLP1920
 1921 KIHRRSSEVK RTGALLERVF MPCQMYFRYT RHKGGNPELK VKPLKELAFN SPDITAGMTS1980
 1981 RQFQVMMDVL TNLLFARAPR TKKSNLSYPL DNDDDDDTGE ESDAVVPDGV EEVELAKIDV2040
 2041 EIKEREWKIL LDDIRTLSVG SEISADETQT PKSDDATWIV TGSRASLVKC LKKELVNVRN2100
 2101 GRKEVSSMLR VAMHKAAQAR LMEKEKNKSP SFAMRVSLKI NKVVWSMLAD GKSFAEAEIN2160
 2161 DMIYDFDRDY KDIGIAHLTT KLFVLKNGLA NAKSDTVLAP WNPPSEWGKN AMLRVNARQG2220
 2221 APTGGNSVIE SLLVDIYPLK IYLTEAMYRM MWGYFFPGDE QHPQKRQELF KVSTTAGTRR2280
 2281 VKKSTSIAET NSPSKQSSKD SMLLQKPELR RTSSFDRTWE ETVAESVANE LVTQFQSQSN2340
 2341 APPESQDAPK EAKLVRSARS TREEKKNMDP NEVKQTRPQK MMDFRNINIS QVELQLTYEG2400
 2401 LPFAVSDVRL LMDTFHREDF TGTWARLFSR VKKHIIWGVL KSVTGMQGKK FKAKSTSQKE2460
 2461 PTASLIAASD FNLSDSDGDE AGGSDQLPAF LKKPNDGAGD GFATSVKGLF SSQRKKAKAF2520
 2521 VLKTMKGDAD HDFQGERSEN EIEFSPFARQ LTITKTKKLI RRHTKKIKSK VPKGAATSQE2580
 2581 LGSELPPRGP SGNQTDSSSS DDNDSSPTET NPKD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..140] deduced N/A No confident structure predictions are available.
    2 View Details [141..258] deduced N/A No confident structure predictions are available.
    3 View Details [259..458] deduced N/A No confident structure predictions are available.
    4 View Details [459..670] deduced N/A No confident structure predictions are available.
    5 View Details [671..731] deduced N/A No confident structure predictions are available.
    6 View Details [732..814] deduced N/A No confident structure predictions are available.
    7 View Details [815..879] deduced N/A No confident structure predictions are available.
    8 View Details [880..1071] MSA 1.055977 View MSA. No confident structure predictions are available.
    9 View Details [1072..1165] deduced N/A No confident structure predictions are available.
    10 View Details [1166..1332] Pfam 3.468521 No description for PF10347.1 was found. No confident structure predictions are available.
    11 View Details [1333..1517] MSA 1.058977 View MSA. No confident structure predictions are available.
    12 View Details [1518..1563] deduced N/A No confident structure predictions are available.
    13 View Details [1564..1701] deduced N/A No confident structure predictions are available.
    14 View Details [1702..1770] deduced N/A No confident structure predictions are available.
    15 View Details [1771..1999] deduced N/A No confident structure predictions are available.
    16 View Details [2000..2142] deduced N/A No confident structure predictions are available.
    17 View Details [2143..2367] deduced N/A No confident structure predictions are available.
    18 View Details [2368..2496] MSA 1.055996 View MSA. No confident structure predictions are available.
    19 View Details [2497..2614] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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