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View Structure Prediction Details

Protein: gi|108708171
Organism: Oryza sativa Japonica Group
Length: 2614 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108708171.

Description E-value Query
Range
Subject
Range
gi|113548600, gi... - gi|125586270|gb|EAZ26934.1| hypothetical protein OsJ_010417 [Oryza sativa (japonica cultivar-group)]...
2413.0 [0..1] [2614..1]
gi|68137455 - gi|68137455|gb|AAY85656.1| aberrant pollen transmission 1 [Zea mays]
2383.0 [0..2] [2609..1]
SAB_ARATH - Protein SABRE OS=Arabidopsis thaliana GN=SAB PE=1 SV=1
2251.0 [0..38] [2614..9]
gi|109113746 - gi|109113746|ref|XP_001108491.1| PREDICTED: similar to CG14967-PA isoform 3 [Macaca mulatta]
1597.0 [0..52] [2498..25]
gi|168272906 - gi|168272906|dbj|BAG10292.1| KIAA0100 protein [synthetic construct]
KIAA0100 - KIAA0100
1594.0 [0..52] [2498..25]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVVGLVQLL VAFVVAWEAV ELVLRHGLLL SLFKFALAAA LAVAASFVAA LFLARVVAWV  60
   61 LRRTAKLSIG CRSFSFNYLR DITIKSPKGA VDSICVGEIR LGLRRPLTQL GFTILNHGPI 120
  121 LQLQISDLDI VLRQPAKSAK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [141-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKKPPPRKST STSPAKGKGK PKGQGKWRLI TNIASLLSLS IVELRFKAPK AALGIKDLKI  60
   61 DLSKTGGLDP ILNVEIHILP LFVQALEPDG IDNSTSVFSK LDWWVSGQYC SAMDTADC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [259-458]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSFLFEDIVL LCDLHQRGKG VGVKNLDLVI GPIVVNLEEK LFTKKKLSAP TVAEKTDEPA  60
   61 ADVKSDTKSE GSKLSSFNKK IDLLPEKVSF NMSKLDLKFL PKDHGLLINN EIGGISVRFV 120
  121 KSQPHSDFGE ATHLQLETDV SDIHLLMDGA TSVLEVVKVA TVVSANIPIQ STSPIRAEAG 180
  181 IKISGSQCNI IISRIKPLIP 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [459-670]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNSAQKKPTV PRESSTQEKT PKEKLALDLV FTLSAPELTI VLYSLDDIPL YHCCLLSTHF  60
   61 AASKTVNQGT ELHAVLGELK LIVAGKPQQS IKDRISGTLL QISRSTIDLE QKVPDKDNCI 120
  121 DNPKSSLSLN ISGVRMNVCF YYLELLCTTA MSYKVFLKSI RPPKKRPAQG TSQKTTKNAK 180
  181 GAQIVKISVE QCAVLYVGDM ILEDMSIQDP KR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [671-731]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNFGSQGGHV VIINDADGSP RMAYVNSTSL PDHKHVNFFT SIEINQIGLC LNKEKQSVQV  60
   61 E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [732-814]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGRSRLTHKE DLLDDKPVEE VTLFDVQKVK FVRRSGGSND SAVCALINVT EVAVWWEPDP  60
   61 YLELLEVATR LKSIMHRIKH QNS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [815-879]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANEIKDDTVY TDTLAKKDSL TEHGQQEKPQ KKQELVIAVD VESLKISGEL ADGVEAMIHV  60
   61 GSIFS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [880-1071]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENAKIGVLIE GLVVSFCGAR IFKCSRTQLS RIPVSISDSL PDKKLQSAAT CDWVIQCRNA  60
   61 YVCLPFRLQL RAIDDAVEDT LRAIKLISAA KMSVLFPEKK SSGSSSSSKK SKSKSTEFRY 120
  121 VRVIVRDLVA EIEEEPIQGW LDEHIDLMKS VFNESTVRLD LLDELASVKH KDSPKAKLDG 180
  181 SSSEKNNGCP EV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1072-1165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGDAPGVCSF EKLREDIYKQ AFQSYYLACQ ALKVSEGSGA CSSGFQSGFK MSTRRSSVMS  60
   61 VCAKDVDVSL SKIDGGDEGM IGFIKTMDPV CAKN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #10
Region A:
Residues: [1166-1332]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIPFSRLYGS NFTLKAKSLS AYLRDYTFPL FSGTSAKCNG RLVLAQQATC FQPQVRQDVY  60
   61 VGKWWRVNLL RSATGYTPPM KSYVDLPLHF QKGEVSFGVG YEPVFADVSY AFTCALRRAN 120
  121 LAKRWFFERP EPPRRERSLP WWDDMRNYIH GKFRLDFTKT TWHLPAK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.468521
Match: PF10347.1
Description: No description for PF10347.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #11
Region A:
Residues: [1333-1517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSPYEKLDQM LITSDYLEIC YVDGYVSLYS KYLKVYLTSL ESLAKKCSLE TPHHEVIPFL  60
   61 ETPSFFMDIA IQWGCDSGNP MDHYIFALPA EGKPRDKVLD PFRSTSLSLK WSFSLKPSTT 120
  121 EPVKHQQNIQ AVSNNSPTVN VGAHDFVWLM KWVNIFFLPP HKLRLFSRFP RFGVPRFIRS 180
  181 GNLPL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #12
Region A:
Residues: [1518-1563]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRVMTEQFIR FDASLLQINN MPLQVDDPAN GLTLHFTKFR LEIAFS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #13
Region A:
Residues: [1564-1701]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGKQIFTFDC KREPLDLVYQ GIDLHLLKVS IKKTPEPSIS KDAQVENKSL HMKATDSPGK  60
   61 NKTSSTEKSR DDGFFLYSDY FTIRKQTPKA DAARLSAWQE DGRKKSEMPL AKSEFDGGEE 120
  121 SDHAQSGSDE EGFNVVVA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #14
Region A:
Residues: [1702-1770]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSCQRVFVYG LKILWNLENR AAIVSWVGDL TQAFQPPKPS PSRQYTQRKI LEKKQSTKEA  60
   61 EMSNDGTLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #15
Region A:
Residues: [1771-1999]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSPLASQSSD PPKQTKSSEP PSSGPSKLES TSTSDTAMKT SNSSDSEEEG TRHFMVNVVQ  60
   61 PQFNLHSEEA NGRFLLAAGS GRVLVRSFHS IVHVGQEMFE KALGSSNVAI GETRPEMSWS 120
  121 RYEVSVMLEH VQAHVAPTDV DPGAGIQWLP KIHRRSSEVK RTGALLERVF MPCQMYFRYT 180
  181 RHKGGNPELK VKPLKELAFN SPDITAGMTS RQFQVMMDVL TNLLFARAP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #16
Region A:
Residues: [2000-2142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTKKSNLSYP LDNDDDDDTG EESDAVVPDG VEEVELAKID VEIKEREWKI LLDDIRTLSV  60
   61 GSEISADETQ TPKSDDATWI VTGSRASLVK CLKKELVNVR NGRKEVSSML RVAMHKAAQA 120
  121 RLMEKEKNKS PSFAMRVSLK INK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #17
Region A:
Residues: [2143-2367]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVWSMLADGK SFAEAEINDM IYDFDRDYKD IGIAHLTTKL FVLKNGLANA KSDTVLAPWN  60
   61 PPSEWGKNAM LRVNARQGAP TGGNSVIESL LVDIYPLKIY LTEAMYRMMW GYFFPGDEQH 120
  121 PQKRQELFKV STTAGTRRVK KSTSIAETNS PSKQSSKDSM LLQKPELRRT SSFDRTWEET 180
  181 VAESVANELV TQFQSQSNAP PESQDAPKEA KLVRSARSTR EEKKN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #18
Region A:
Residues: [2368-2496]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPNEVKQTR PQKMMDFRNI NISQVELQLT YEGLPFAVSD VRLLMDTFHR EDFTGTWARL  60
   61 FSRVKKHIIW GVLKSVTGMQ GKKFKAKSTS QKEPTASLIA ASDFNLSDSD GDEAGGSDQL 120
  121 PAFLKKPND

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #19
Region A:
Residues: [2497-2614]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAGDGFATSV KGLFSSQRKK AKAFVLKTMK GDADHDFQGE RSENEIEFSP FARQLTITKT  60
   61 KKLIRRHTKK IKSKVPKGAA TSQELGSELP PRGPSGNQTD SSSSDDNDSS PTETNPKD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle