YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|111074418, gi...
Organism:	Arabidopsis thaliana
Length:	418 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|111074418, gi....

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	459.0	[0..1]	[417..1280]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	442.0	[0..1]	[417..972]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	439.0	[0..1]	[417..1152]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	427.0	[0..1]	[417..634]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	427.0	[0..1]	[417..182]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	424.0	[0..1]	[415..865]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTKDDSDF EDDCETKKME TDTSAQEARN GKDIQGIQWE GFKYNRDEFR ETRLKQYDNF  60
   61 VNILRPSSRE KLDKEHGQVV EKGKNFYDFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.154902
Match:	1s4uX
Description:	Crystal Structure analysis of the beta-propeller protein Ski8p
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [91-418]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNTRLVTSTI VHFQLRNLVW ATSKHDVYLM QNYSLMHWSS LLQRGKEVLN VARSVTPTQK  60
   61 LPGLFSEPLS RVQVSSMAVK ENLILLGGFD GELLCKCVNQ PGVAFCTRLS TEDNAITNTV 120
  121 DIYRDPSGSL RLITANNDCK IRVFDAQSFT RVSEFALDWS VNNTSVSPDG KLLAVVGDST 180
  181 ECLISDSHSG KVISSLRGHK DYSFASAWHP NGLILATGNQ DTACRLWDIR NPSESFAVLK 240
  241 GNMGAIRGLK FTPEGRFLAM AEPADFVHIF DTQSGFLQSQ EIDLFGEIAG ISFSPDTEAL 300
  301 YVGVADRTYG SLLEYKRRKD NHYMDSFY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	1b9xA
Description:	beta1-subunit of the signal-transducing G protein heterotrimer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits