| Protein: | gi|42562356 |
| Organism: | Arabidopsis thaliana |
| Length: | 682 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42562356.
| Description | E-value | Query Range |
Subject Range |
|
|
337.0 | [0..1] | [682..1] |
|
Region A: Residues: [1-230] |
1 11 21 31 41 51
| | | | | |
1 MDLSIVKLLE EDEEVDSKHS EDDLQMFQDS LIRDIEEKPQ PRYMKLQKMS SKETPWVEKT 60
61 VDPVNHNLRL ARVTDLLRTV VDHQPGKKTH CLNLHYKLKR KELTMEEFMR QLRDLVGDQI 120
121 IRSGNMGIKV PGRSNHDKVS KSAEFTAQES DPREVHVNQL SSTTSGTLNS STTVQGLNKH 180
181 PEQHMQLPSS SFHMDTKSGS LNPYPGTNVT SPGSSSRAKL PDFQHRENNQ
|
| Detection Method: |  |
| Confidence: | 5.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [231-283] |
1 11 21 31 41 51
| | | | | |
1 NVGIASVGGP TKSTINMTTV PKFERPTFVN GPSRVQDGPI SDFPKNSSFP LYS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [284-433] |
1 11 21 31 41 51
| | | | | |
1 APWQGSVTKD HTVGPSSSVI HVEHKLIDQS FEQAHKPRYL VQQGVTNVPL KQKNAIPISS 60
61 NDDLEKQSSK MGLFTSTTSA SSVFPSMTTQ LDSSTMVNMP APSETIPKIA NVTVTPKMPS 120
121 VGQKKPLEAL GSSLPPSRKK QKICGTSSDE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [434-504] |
1 11 21 31 41 51
| | | | | |
1 SIEKFNDVTA VSGINLREEE KQLLDSGPKK NDRVSKAYRR LVHGEEERTL LQKIPLQRKL 60
61 TEIMGKSGLK H
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [505-682] |
1 11 21 31 41 51
| | | | | |
1 IDHDVERCLS LLQELLQRTD AEKCRNRTFI TSDIRKEINE MNQKVKEEWE KKHSGEEKNK 60
61 ENDTEKEDQR SNEVKANKKD EDKERAKAAN VAVRAAVGGD DRFSKWKLMA EARQRSSPGP 120
121 GRNSKKLSGG TQFGKNQGLP KVVRSISVKD VIAVVEKEPQ MSRSTLLYRV YNRICSDV
|
| Detection Method: | |
| Confidence: | 7.154902 |
| Match: | 2i1jA |
| Description: | No description for 2i1jA was found. |
