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Protein Overview: gi|42562356

General Information:
Name(s) found: gi|42562356 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|42562356|ref|NP_174093.2| transcription initiation factor [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 682 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSIVKLLE EDEEVDSKHS EDDLQMFQDS LIRDIEEKPQ PRYMKLQKMS SKETPWVEKT  60
   61 VDPVNHNLRL ARVTDLLRTV VDHQPGKKTH CLNLHYKLKR KELTMEEFMR QLRDLVGDQI 120
  121 IRSGNMGIKV PGRSNHDKVS KSAEFTAQES DPREVHVNQL SSTTSGTLNS STTVQGLNKH 180
  181 PEQHMQLPSS SFHMDTKSGS LNPYPGTNVT SPGSSSRAKL PDFQHRENNQ NVGIASVGGP 240
  241 TKSTINMTTV PKFERPTFVN GPSRVQDGPI SDFPKNSSFP LYSAPWQGSV TKDHTVGPSS 300
  301 SVIHVEHKLI DQSFEQAHKP RYLVQQGVTN VPLKQKNAIP ISSNDDLEKQ SSKMGLFTST 360
  361 TSASSVFPSM TTQLDSSTMV NMPAPSETIP KIANVTVTPK MPSVGQKKPL EALGSSLPPS 420
  421 RKKQKICGTS SDESIEKFND VTAVSGINLR EEEKQLLDSG PKKNDRVSKA YRRLVHGEEE 480
  481 RTLLQKIPLQ RKLTEIMGKS GLKHIDHDVE RCLSLLQELL QRTDAEKCRN RTFITSDIRK 540
  541 EINEMNQKVK EEWEKKHSGE EKNKENDTEK EDQRSNEVKA NKKDEDKERA KAANVAVRAA 600
  601 VGGDDRFSKW KLMAEARQRS SPGPGRNSKK LSGGTQFGKN QGLPKVVRSI SVKDVIAVVE 660
  661 KEPQMSRSTL LYRVYNRICS DV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..230] PSI-BLAST 5.69897 Sec24
    2 View Details [231..283] deduced N/A No confident structure predictions are available.
    3 View Details [284..433] MSA 2.299992 View MSA. No confident structure predictions are available.
    4 View Details [434..504] deduced N/A No confident structure predictions are available.
    5 View Details [505..682] PSI-BLAST 7.154902 No description for 2i1jA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle