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View Structure Prediction Details

Protein: gi|95147306, gi|...
Organism: Arabidopsis thaliana
Length: 515 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|95147306, gi|....

Description E-value Query
Range
Subject
Range
gi|10177334 - gi|10177334|dbj|BAB10683.1| lysosomal Pro-X carboxypeptidase [Arabidopsis thaliana]
474.0 [0..1] [515..1]

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Predicted Domain #1
Region A:
Residues: [1-68]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHFCLLLI FTFFTLVFPS NGSSLSSSKL LPRFPRYTFQ NREARIQQFR GDRNEYRYET  60
   61 KFFSQQLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 2hdwA
Description: No description for 2hdwA was found.

Predicted Domain #2
Region A:
Residues: [69-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HFSFADLPKF SQRYLINSDH WLGASALGPI FLYCGNEGDI EWFATNSGFI WDIAPKFGAL  60
   61 LVFPEHRYYG ESMPYGSREE AYKNATTLSY LTTEQALADF AVFVTDLKRN LSAEACPVVL 120
  121 FGGSYGGMLA AWMRLKYPHI AIGALASSAP ILQFEDVVPP ETFYDIASND FKRESSSCFN 180
  181 TIKDSWDAII AEGQKENGLL QLTKTFHFCR VLNSTDDLSD WLDSAYSYLA MVDYPYPADF 240
  241 MMPLPGHPIR EVCRKIDGAG SNASILDRIY AGISVYYNYT GNVDCFKLDD DP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.39794
Match: 1qtrA
Description: Proline aminopeptidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 3.13500795029724 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.560001331598537 bayes_pls_golite062009
peptidase activity 0.49210021845334 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.204622919291197 bayes_pls_golite062009
structural molecule activity 0.151914509834157 bayes_pls_golite062009
binding 0.112743564301567 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [361-515]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGLDGWNWQA CTEMVMPMSS NQENSMFPGY GFNYSSYKEE CWNTFRVNPR PKWVTTEFGG  60
   61 HDIATTLKSF GSNIIFSNGL LDPWSGGSVL KNLSDTIVAL VTKEGAHHLD LRPSTPEDPK 120
  121 WLVDQREAEI RLIQGWIETY RVEKEAKVSL LKRSW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle