| Protein: | gi|42563505 |
| Organism: | Arabidopsis thaliana |
| Length: | 747 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42563505.
| Description | E-value | Query Range |
Subject Range |
|
|
818.0 | [0..1] | [731..1] |
|
|
571.0 | [0..40] | [735..160] |
|
|
570.0 | [0..40] | [735..175] |
|
|
568.0 | [0..40] | [735..108] |
|
|
567.0 | [0..40] | [735..87] |
|
|
566.0 | [0..40] | [735..104] |
|
Region A: Residues: [1-180] |
1 11 21 31 41 51
| | | | | |
1 MKLSRTVLSC LPSLLKPYSS LSWTTKIATI ATNFEGMKTV DEADVGISCF ISQLPGFRGI 60
61 LKQRYADFIV NEVDMDGNVV HLTSLDLPPE MAVKEEDKAK SCDNVPQNYT SAVESFKSIS 120
121 SVTDAERLEI LINQVTSGTD GEVLPVVLDP SSDKSKRTAI HNFVKENFKF LVTDTVDGPD 180
181
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [181-629] |
1 11 21 31 41 51
| | | | | |
1 STSKCIRVRV NSGANNNRGN RSKKRKERGD KPFDSRGSEH WPEHVGKFLR FHLYKENKDT 60
61 QEALGLIGKM LGVQPKSFGF SGTKDKRSVS TQRVTVFKQQ ASKLAALNKR LFGIKVGDFC 120
121 NVKEGLLLGQ LMGNRFTITL RGVVADSEET IKQSAESLGK DGFINYFGLQ RFGSGSVPTH 180
181 HVGAALLKGE WKDAVDMILD PRETDILLHD LFFLTLRFFL QRHVVNDARE YYKETGDIDG 240
241 TLRQLPRYLV AERAILQCLK KCPGNYLQAL KGIPRTLRMM YVHSYQSYLW NNAASLRVKN 300
301 YGTSQVVLGD LVSTKVDAAK RMVDSLTSEH NESSEEALDC DQVDDTAVVD LPAERSDLVK 360
361 VVSIEDLEAG TYSTSDIVLP LPGSRVIYPS NDIAEIYHDL AKKDGISLTE SIHGVKEFSI 420
421 TSMTGGYRRV FQKPIDFEWE LLTYTDSNK
|
| Detection Method: | |
| Confidence: | 82.0 |
| Match: | 1z2zA |
| Description: | Crystal Structure of the Putative tRNA pseudouridine synthase D (TruD) from Methanosarcina mazei, Northeast Structural Genomics Target MaR1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [630-747] |
1 11 21 31 41 51
| | | | | |
1 PLAETDLDRI PMNKPVEKVG STEEIEDESM KSDTNPHDSG ETNLKDQTDS NEAEKDTGNP 60
61 DSEQTQMALK MALTLPSSCY ATMAIRELLK TSTSVSTQTA ESQKFLNSLE FGTSKFTN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.689 | a.152.1 | Antioxidant defence protein AhpD |
| View | Download | 0.570 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.551 | a.186.1 | Description not found. |
| View | Download | 0.529 | a.152.1 | Antioxidant defence protein AhpD |
| View | Download | 0.525 | a.130.1 | Chorismate mutase II |
| View | Download | 0.506 | a.1.1 | Globin-like |
| View | Download | 0.421 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.418 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.415 | a.1.1 | Globin-like |
| View | Download | 0.411 | a.1.1 | Globin-like |
