YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|42563505

General Information:
Name(s) found: gi|42563505 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|42563505|ref|NP_187133.2| pseudouridylate synthase [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 747 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSRTVLSC LPSLLKPYSS LSWTTKIATI ATNFEGMKTV DEADVGISCF ISQLPGFRGI  60
   61 LKQRYADFIV NEVDMDGNVV HLTSLDLPPE MAVKEEDKAK SCDNVPQNYT SAVESFKSIS 120
  121 SVTDAERLEI LINQVTSGTD GEVLPVVLDP SSDKSKRTAI HNFVKENFKF LVTDTVDGPD 180
  181 STSKCIRVRV NSGANNNRGN RSKKRKERGD KPFDSRGSEH WPEHVGKFLR FHLYKENKDT 240
  241 QEALGLIGKM LGVQPKSFGF SGTKDKRSVS TQRVTVFKQQ ASKLAALNKR LFGIKVGDFC 300
  301 NVKEGLLLGQ LMGNRFTITL RGVVADSEET IKQSAESLGK DGFINYFGLQ RFGSGSVPTH 360
  361 HVGAALLKGE WKDAVDMILD PRETDILLHD LFFLTLRFFL QRHVVNDARE YYKETGDIDG 420
  421 TLRQLPRYLV AERAILQCLK KCPGNYLQAL KGIPRTLRMM YVHSYQSYLW NNAASLRVKN 480
  481 YGTSQVVLGD LVSTKVDAAK RMVDSLTSEH NESSEEALDC DQVDDTAVVD LPAERSDLVK 540
  541 VVSIEDLEAG TYSTSDIVLP LPGSRVIYPS NDIAEIYHDL AKKDGISLTE SIHGVKEFSI 600
  601 TSMTGGYRRV FQKPIDFEWE LLTYTDSNKP LAETDLDRIP MNKPVEKVGS TEEIEDESMK 660
  661 SDTNPHDSGE TNLKDQTDSN EAEKDTGNPD SEQTQMALKM ALTLPSSCYA TMAIRELLKT 720
  721 STSVSTQTAE SQKFLNSLEF GTSKFTN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] MSA 1.069989 View MSA. No confident structure predictions are available.
    2 View Details [181..629] PSI-BLAST 82.0 Crystal Structure of the Putative tRNA pseudouridine synthase D (TruD) from Methanosarcina mazei, Northeast Structural Genomics Target MaR1
    3 View Details [630..747] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle