YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42569956
Organism:	Arabidopsis thaliana
Length:	342 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42569956.

Description	E-value	Query Range	Subject Range
ASK21_ARATH - SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1	340.0	[0..1]	[339..1]
gi\|34902374, gi\|... - gi\|34902374\|ref\|NP_912533.1\| Putative SKP1-like protein [Oryza sativa (japonica cultivar-group)], gi...	319.0	[0..15]	[339..93]
gi\|92892746 - gi\|92892746\|gb\|ABE91380.1\| SKP1 component [Medicago truncatula]	316.0	[0..1]	[338..1]
gi\|146387063, gi... - gi\|146387063\|pdb\|2OVR\|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex, gi\|146387060\|pdb\|2O...	213.0	[0..16]	[167..2]
gi\|73948993 - gi\|73948993\|ref\|XP_535176.2\| PREDICTED: similar to S-phase kinase-associated protein 1A isoform b [C...	213.0	[0..16]	[167..83]
gi\|26347143, gi\|... - gi\|31560543\|ref\|NP_035673.2\| S-phase kinase-associated protein 1A [Mus musculus], gi\|26347143\|dbj\|BA...	207.0	[0..16]	[167..2]
gi\|114601681, gi... - gi\|114601685\|ref\|XP_001166324.1\| PREDICTED: similar to OCP-II protein isoform 8 [Pan troglodytes], g...	207.0	[0..16]	[167..13]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGDLAVMK PETMKSYIWL QTADGSIQQV EQEVAMFCPM ICQEVIQKGV GSSKNHAISL  60
   61 PQRVNPAMFS LILDYCRFHQ LPGRSNKERK TYDERFIRMD TKRLCELTSA ADSLQLKPLV 120
  121 DLTSRALARI IEGKNPEEIR EIFHLPDDLT EEEKLEPLKN SMDDPRIRLL NRLYA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.39794
Match:	1fqvB
Description:	Cyclin A/CDK2-associated p45, Skp1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [176-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKRKELKERE RLKNVEVEEH VDERSVDDLL SFINGRDHKA VKMSKGKKKK KKKKDQKIVS  60
   61 SNNI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [240-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDKESHDLRS KQQCVEEIGS SMREVPNLLS AEDDISTPNA GSEDEDIDDE IDPAMRELLD  60
   61 REVEDFAQRL NSNWVRSLGK ERRPVHFSIN GNGTTRRHTG QSP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.805	N/A	N/A	a.1.1	Globin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits