| Protein: | gi|42569956 |
| Organism: | Arabidopsis thaliana |
| Length: | 342 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42569956.
| Description | E-value | Query Range |
Subject Range |
|
|
340.0 | [0..1] | [339..1] |
|
|
319.0 | [0..15] | [339..93] |
|
|
316.0 | [0..1] | [338..1] |
|
|
213.0 | [0..16] | [167..2] |
|
|
213.0 | [0..16] | [167..83] |
|
|
207.0 | [0..16] | [167..2] |
|
|
207.0 | [0..16] | [167..13] |
|
Region A: Residues: [1-175] |
1 11 21 31 41 51
| | | | | |
1 MSEGDLAVMK PETMKSYIWL QTADGSIQQV EQEVAMFCPM ICQEVIQKGV GSSKNHAISL 60
61 PQRVNPAMFS LILDYCRFHQ LPGRSNKERK TYDERFIRMD TKRLCELTSA ADSLQLKPLV 120
121 DLTSRALARI IEGKNPEEIR EIFHLPDDLT EEEKLEPLKN SMDDPRIRLL NRLYA
|
| Detection Method: |  |
| Confidence: | 55.39794 |
| Match: | 1fqvB |
| Description: | Cyclin A/CDK2-associated p45, Skp1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [176-239] |
1 11 21 31 41 51
| | | | | |
1 KKRKELKERE RLKNVEVEEH VDERSVDDLL SFINGRDHKA VKMSKGKKKK KKKKDQKIVS 60
61 SNNI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.650 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.598 | N/A | N/A | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.419 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.382 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.379 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.359 | N/A | N/A | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.307 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.223 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [240-342] |
1 11 21 31 41 51
| | | | | |
1 HDKESHDLRS KQQCVEEIGS SMREVPNLLS AEDDISTPNA GSEDEDIDDE IDPAMRELLD 60
61 REVEDFAQRL NSNWVRSLGK ERRPVHFSIN GNGTTRRHTG QSP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.805 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.805 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.715 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.700 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.605 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.531 | N/A | N/A | a.29.10 | Description not found. |
| View | Download | 0.480 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.480 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.411 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.355 | N/A | N/A | a.26.1 | 4-helical cytokines |
