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View Structure Prediction Details

Protein: gi|42569857
Organism: Arabidopsis thaliana
Length: 441 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42569857.

Description E-value Query
Range
Subject
Range
DPOD2_ARATH - DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=2
473.0 [0..1] [441..1]

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Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIDSEKIHE RKQSDYNSLQ DERFEIQKEM YRGQQYSQIY FARLHLMRTL LYSLAPTWKS  60
   61 HLPVCKVLGL EKGKECIIVG TLFKHMKLKP CVLDEYSKER SVTPLVKPHN FMHPDDNLIL 120
  121 EDESGRVKLA GSALSPAIYV TGVVVALHGK ETNAGEFFVE DVLEAGLPPQ IER

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [174-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIDLQEDKYV VLLSGLCIGS KSANPLQFQL LVDHITGHLG DEEEQGLAAQ IVHVVIAGNS  60
   61 FEFPRKLING QNLASKDQST LYEPIKELDI MLSQIAAGVS VDIMPGTNDP ANFALPQQPL 120
  121 NRCLFPGSSP YNTFRSCTNP HSFDVDNIRF LGTSGQNIDD LGKYSEAKSK LDFVERTLRW 180
  181 RHLAPTAPNT LGCYPFTDRD PFLIETCPHV YFVGNQDKYD NRLIKGSEGQ LVRLICIPKF 240
  241 CETGIAVAVN LRNLECHTLS FSTQINQS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 2yvtA
Description: No description for 2yvtA was found.

Predicted functions:

Term Confidence Notes
hydrolase activity 3.13006743434485 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.92134374210115 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.74872156325503 bayes_pls_golite062009
protein serine/threonine phosphatase activity 1.72108778738758 bayes_pls_golite062009
transferase activity 1.70522125323477 bayes_pls_golite062009
catalytic activity 1.39852585255405 bayes_pls_golite062009
phosphoric ester hydrolase activity 1.38658762861868 bayes_pls_golite062009
phosphatase activity 1.26648680762208 bayes_pls_golite062009
binding 1.24690422779109 bayes_pls_golite062009
phosphoprotein phosphatase activity 1.23036240099336 bayes_pls_golite062009
structural molecule activity 0.204234628453541 bayes_pls_golite062009
protein binding 0.184079020957384 bayes_pls_golite062009
calcium-dependent protein serine/threonine phosphatase activity 0.0429959933934001 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle