YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|42569857

General Information:
Name(s) found: gi|42569857 [NCBI NR]
Description(s) found:
Found 7 descriptions.
SHOW ALL
  • gi|42569857|ref|NP_181742.2| POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT); DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 441 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIDSEKIHE RKQSDYNSLQ DERFEIQKEM YRGQQYSQIY FARLHLMRTL LYSLAPTWKS  60
   61 HLPVCKVLGL EKGKECIIVG TLFKHMKLKP CVLDEYSKER SVTPLVKPHN FMHPDDNLIL 120
  121 EDESGRVKLA GSALSPAIYV TGVVVALHGK ETNAGEFFVE DVLEAGLPPQ IERPIDLQED 180
  181 KYVVLLSGLC IGSKSANPLQ FQLLVDHITG HLGDEEEQGL AAQIVHVVIA GNSFEFPRKL 240
  241 INGQNLASKD QSTLYEPIKE LDIMLSQIAA GVSVDIMPGT NDPANFALPQ QPLNRCLFPG 300
  301 SSPYNTFRSC TNPHSFDVDN IRFLGTSGQN IDDLGKYSEA KSKLDFVERT LRWRHLAPTA 360
  361 PNTLGCYPFT DRDPFLIETC PHVYFVGNQD KYDNRLIKGS EGQLVRLICI PKFCETGIAV 420
  421 AVNLRNLECH TLSFSTQINQ S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..173] MSA 2.145986 View MSA. No confident structure predictions are available.
    2 View Details [174..441] PSI-BLAST 4.69897 No description for 2yvtA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • hydrolase activity
    		•  3.13006743434485 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.92134374210115 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.74872156325503 bayes_pls_golite062009
  • protein serine/threonine phosphatase activity
    		•  1.72108778738758 bayes_pls_golite062009
  • transferase activity
    		•  1.70522125323477 bayes_pls_golite062009
  • catalytic activity
    		•  1.39852585255405 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  1.38658762861868 bayes_pls_golite062009
  • phosphatase activity
    		•  1.26648680762208 bayes_pls_golite062009
  • binding
    		•  1.24690422779109 bayes_pls_golite062009
  • phosphoprotein phosphatase activity
    		•  1.23036240099336 bayes_pls_golite062009
  • structural molecule activity
    		•  0.204234628453541 bayes_pls_golite062009
  • protein binding
    		•  0.184079020957384 bayes_pls_golite062009
  • calcium-dependent protein serine/threonine phosphatase activity
    		•  0.0429959933934001 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle