YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SCP28_ARATH
Organism: Arabidopsis thaliana
Length: 462 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCP28_ARATH.

Description E-value Query
Range
Subject
Range
gi|20197526, gi|... - pir||G84772 probable serine carboxypeptidase II [imported] - Arabidopsis thaliana, gi|20197526|gb|AA...
477.0 [0..16] [462..1]

Back

Predicted Domain #1
Region A:
Residues: [1-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMITKKLYQC MCLLCMVIAL LDVVSSDDAK EQKMKDKIIS LPGQPPNLNF SQFSGYVTVD  60
   61 PAAGRALFYW LTEAPRPSGT KPLVLWLNGG PGCSSIAYGA SEEVGPFRVN PDGKTLRLNL 120
  121 YAWNKVANVL FLDSPAGVGF SYTNTSSDEL TVGDKRTGED AYRFLVRWLE RFPEYKERAF 180
  181 YIAGESYAGH YIPELAQLIV NRNKGAKNPT INLKGILMGN PLVDDYNDNK GMRDYWWNHG 240
  241 LISDESYNDL TKWCLNDSIL FPKLNCNAAL NQALSEFGDI DPYNINSPAC 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.69897
Match: 1bcrA
Description: Serine carboxypeptidase II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 4.09944423676394 bayes_pls_golite062009
peptidase activity 2.49064988313037 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.11440496336538 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.10044305272656 bayes_pls_golite062009
palmitoyl-(protein) hydrolase activity 1.46950384675756 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
binding 0.780364496307855 bayes_pls_golite062009
endopeptidase activity 0.35106325845064 bayes_pls_golite062009
palmitoyl-CoA hydrolase activity 0.1174692258176 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [291-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTHASSNEWM QAWRYRGNDE CVVGYTRKYM NDPNVHKSFH ARLNGSTPWT PCSRVIRKNW  60
   61 KDSPKSMLPI IKNLLQAHLR IWIFSGDSDA VLPLSGTRHS INAMKLKSSK RWYPWYHSHG 120
  121 LVGGWSQVYE DGLLTYTTVR AAGHEVPLSQ PRLALFLFTH FLANHSLPSS PS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.0
Match: 1bcrB
Description: COMPLEX OF THE WHEAT SERINE CARBOXYPEPTIDASE, CPDW-II, WITH THE MICROBIAL PEPTIDE ALDEHYDE INHIBITOR, ANTIPAIN, AND ARGININE AT ROOM TEMPERATURE
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle