| Protein: | gi|42569389 |
| Organism: | Arabidopsis thaliana |
| Length: | 1106 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42569389.
| Description | E-value | Query Range |
Subject Range |
|
|
1295.0 | [0..1] | [1106..1] |
|
Region A: Residues: [1-190] |
1 11 21 31 41 51
| | | | | |
1 MKRTTFLEDA ERVKLYNDAR ALFANGDHIK ALEIIEDIIL VHKEDEKSWI LHSEQGEMFN 60
61 DLAGKAENPY VDFTYMLGSV GCYSKDVLLS RPWAHGLHYL AQESGSVMYY KKCVNVAKQG 120
121 LSVTFPDASE SFAQLLLENL KNDMKENLET LIKDAESNIA DSKTVELKGL LQQDFEPEVL 180
181 ESKKRPELVK
|
| Detection Method: |  |
| Confidence: | 2.15 |
| Match: | 1a17A |
| Description: | TETRATRICOPEPTIDE REPEATS OF PROTEIN PHOSPHATASE 5 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [191-384] |
1 11 21 31 41 51
| | | | | |
1 NEFKGLRSFW LGLDVNVKRD FMKVSIAKLI GFVKGVHHRP GRDALKQILD SAKEDRKWTF 60
61 WMCRTKCSKK FSSAEECKNH LEKEHAADYK PFSEMDMAKR IGKDWTRKIS LGSWEPVDIA 120
121 AAVEMIKNRL PEVKAFSYKN GWSKEWPLAE DEERSKLLKE IKFFLVMFCD LKILPCSIRD 180
181 WMKRYSVTHL KNLN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.227 | N/A | N/A | d.2.1 | Lysozyme-like |
| View | Download | 0.213 | N/A | N/A | d.110.4 | SNARE-like |
|
Region A: Residues: [385-618] |
1 11 21 31 41 51
| | | | | |
1 VSEQSLVDSH LVDTPQSICF LECHKLSYIL NLLKRIKCER DDGTNLVRRA VDSILDSTRS 60
61 KEKIDFDPQF SFLLLDRRLL KSNNGPFVDE GEINVFDPNV HYAKAHAQGD DIVSWLTDYN 120
121 SVEKTFPRPI REHNLDIWVA VLRAVQFTCR TFGTKYAKKV QLFDYLAAIV AAEKLCKSEY 180
181 ERRRKLKEDQ WNSYASLLCD KCEECFSRKN FLKRKLFLSV VRDILEEASD LTFD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [619-708] |
1 11 21 31 41 51
| | | | | |
1 LPDIEGCMNL IREHKSLNDD IVLKSLICLN SVVIFKILLI DSKILLVDNS RISLLNNLTR 60
61 LSLFDNRTYI LQLLKPFLLN EIVNMESKAK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.833 | d.58.49 | YajQ-like |
| View | Download | 0.761 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.737 | d.58.38 | Urease metallochaperone UreE, C-terminal domain |
| View | Download | 0.721 | d.58.49 | YajQ-like |
| View | Download | 0.707 | d.58.7 | RNA-binding domain, RBD |
|
Region A: Residues: [709-1106] |
1 11 21 31 41 51
| | | | | |
1 SDAAVADLLL EEEKKNPKPS PIQSKKKKNT SKKRNSTSMS SPLSKPGEHL EPETTSPTVE 60
61 EDSMELGDTV NQEEVMKNML GEDSQSEHLE SALSEASARY NSALDMTLKA LLNIKILKED 120
121 LMHNMQPLQH HLEDQVPSVL QNFFTAFVSE EIKTEGVYSY LLSDLLALLE EVLSMSSGAA 180
181 EVLVAILEFW HCWKNAERES LVTRLFTLEE KERMSCRKCR KKPNYPEQSS YGIVMAADSI 240
241 RDLKCALGNI EFVDILKVIR MDYTMLCDIK NGGCGIANFI HHIISKCPPI FTIVLEWEKS 300
301 ETEKEISETT KAFEWEIDIS RLYAGLEPKT NYRLASMVGC DEKQEHICIA YEKNRWVNLR 360
361 RDALAGEDVG NWKSVVRFCG ERKVRPEILF YEVVRSMA
|
| Detection Method: | |
| Confidence: | 52.09691 |
| Match: | 2f1zA |
| Description: | Crystal structure of HAUSP |
Matching Structure (courtesy of the PDB): |
|
