YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|8569292, gi\|8...
Organism:	Escherichia coli
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8569292, gi|8....

Description	E-value	Query Range	Subject Range
gi\|30410826 - gi\|30410826\|ref\|NP_660857.2\| single-strand binding protein [Buchnera aphidicola str. Sg (Schizaphis ...	177.0	[0..1]	[129..16]
gi\|213646761 - gi\|213646761\|ref\|ZP_03376814.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enteri... SSB2_SALTI - Single-stranded DNA-binding protein 2 OS=Salmonella typhi GN=ssb2 PE=3 SV=1 gi\|213609821 - gi\|213609821\|ref\|ZP_03369647.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enteri... gi\|213428139 - gi\|213428139\|ref\|ZP_03360889.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enteri... gi\|213161420 - gi\|213161420\|ref\|ZP_03347130.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enteri... gi\|32454454 - gi\|32454454\|gb\|AAP83026.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enterica se... SSB2_SALTI - Single-stranded DNA-binding protein 2 OS=Salmonella typhi GN=ssb2 PE=3 SV=1 gi\|224586099, gi... - gi\|224586099\|ref\|YP_002639898.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enter... gi\|29140135, gi\|... - gi\|29144497\|ref\|NP_807839.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enterica ... gi\|16763010 - gi\|16763010\|ref\|NP_458627.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enterica ...	177.0	[0..1]	[145..2]
gi\|2780886, gi\|2... - gi\|2780888\|pdb\|1KAW\|D Chain D, Structure Of Single Stranded Dna Binding Protein (Ssb), gi\|2780887\|pd...	176.0	[0..1]	[135..1]
gi\|218321382, gi... - gi\|218708363\|ref\|YP_002415984.1\| single-stranded DNA-binding protein [Vibrio splendidus LGP32], gi\|2... gi\|86147857, gi\|... - gi\|86147857\|ref\|ZP_01066163.1\| single-strand DNA-binding protein [Vibrio sp. MED222], gi\|85834384\|gb...	176.0	[0..1]	[136..2]
gi\|84780626, gi\|... - gi\|85060106\|ref\|YP_455808.1\| single-strand DNA-binding protein [Sodalis glossinidius str. 'morsitans...	176.0	[0..1]	[145..2]
gi\|75179580, gi\|... - gi\|75179580\|ref\|ZP_00699584.1\| COG0629: Single-stranded DNA-binding protein [Shigella boydii BS512],...	176.0	[0..1]	[143..2]
gi\|311086266\|gb\|... - single-strand binding protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi\|311087920\|gb\|... - single-strand binding protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] SSB_BUCAI - Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ssb PE=3 SV... gi\|311087430\|gb\|... - single-strand binding protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] SSB_BUCAI - Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) G... gi\|219682445, gi... - gi\|219682445\|ref\|YP_002468829.1\| single-strand binding protein [Buchnera aphidicola str. Tuc7 (Acyrt... gi\|257471595\|ref... - single-strand binding protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi\|25294289 - gi\|25294289\|pir\|\|E84993 single-strand binding protein [imported] - Buchnera sp. (strain APS) gi\|311086841\|gb\|... - single-strand binding protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi\|219681890, gi... - gi\|219681890\|ref\|YP_002468276.1\| single-strand binding protein [Buchnera aphidicola str. 5A (Acyrtho...	176.0	[0..1]	[131..2]
gi\|149740690, gi... - gi\|153825660\|ref\|ZP_01978327.1\| single-strand binding protein [Vibrio cholerae MZO-2], gi\|149740690\|... gi\|116217618, gi... - gi\|75823980\|ref\|ZP_00753451.1\| COG0629: Single-stranded DNA-binding protein [Vibrio cholerae RC385],... gi\|124122241, gi... - gi\|153802217\|ref\|ZP_01956803.1\| single-strand binding protein [Vibrio cholerae MZO-3], gi\|124122241\|... tr\|A2PTS8\|A2PTS8... - Single-stranded DNA-binding protein OS=Vibrio cholerae GN=ssb PE=3 SV=1, Single-stranded DNA-binding... gi\|254291302, gi... - gi\|254291302\|ref\|ZP_04962096.1\| single-strand binding protein [Vibrio cholerae AM-19226], gi\|1977513... gi\|148875218, gi... - gi\|153829318\|ref\|ZP_01981985.1\| single-strand binding protein [Vibrio cholerae 623-39], gi\|148875218...	175.0	[0..1]	[142..2]
gi\|3851548 - gi\|3851548\|gb\|AAC72352.1\| single strand DNA-binding protein; SSB [Vibrio cholerae]	175.0	[0..1]	[142..17]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASRGVNKVIL VGNLGQDPEV RYMPNGGAVA NITLATSESW RDKATGEMKE QTEWHRVVLF  60
   61 GKLAEVASEY LRKGSQVYIE GQLRTRKWTD QSGQDRYTTE VVVNVGGTMQ MLGGRQGGGA 120
  121 PAGGNIGGGQ PQGGWGQPQQ PQGGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	1kawA
Description:	ssDNA-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	1.65948797337693	bayes_pls_golite062009
single-stranded DNA binding	1.38758756313423	bayes_pls_golite062009
structure-specific DNA binding	1.30327082958682	bayes_pls_golite062009
binding	0.902189695502298	bayes_pls_golite062009
DNA binding	0.9001707539121	bayes_pls_golite062009
structural constituent of ribosome	0.0989196136046104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: