YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1942461, gi\|1...
Organism:	Saccharomyces cerevisiae
Length:	246 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1942461, gi|1....

Description	E-value	Query Range	Subject Range
RAP1 - DNA-binding protein involved in either activation or repression of transcription, depending on bindi... RAP1_YEAST - DNA-binding protein RAP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAP1 PE=1 SV=2	463.0	[0..1]	[246..353]
gi\|28070976 - gi\|28070976\|emb\|CAD61868.1\| Repressor Activator Protein 1 [Saccharomyces dairenensis]	457.0	[0..4]	[246..377]
gi\|15100061 - gi\|15100061\|gb\|AAK84226.1\|AF401990_1 repressor activator protein 1 [Saccharomyces castellii]	450.0	[0..1]	[246..335]
gi\|44980686 - gi\|44980686\|gb\|AAS50591.1\| ABL180Wp [Ashbya gossypii ATCC 10895] gi\|45185050, gi\|... - gi\|45185050\|ref\|NP_982767.1\| ABL180Wp [Ashbya gossypii ATCC 10895], gi\|44980686\|gb\|AAS50591.1\| ABL18...	438.0	[0..3]	[245..218]
gi\|50292015, gi\|... - gi\|50292015\|ref\|XP_448440.1\| RAP1_CANGA [Candida glabrata], gi\|49527752\|emb\|CAG61401.1\| RAP1_CANGA [... gi\|15130641, gi\|... - gi\|49527752\|emb\|CAG61401.1\| unnamed protein product [Candida glabrata], gi\|15130641\|dbj\|BAB62800.1\| ...	437.0	[0..7]	[246..231]
gi\|49643052, gi\|... - gi\|50307849\|ref\|XP_453918.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643052\|emb\|CAH0101... gi\|313663, gi\|49... - gi\|49643052\|emb\|CAH01014.1\| KLLA0D19294p [Kluyveromyces lactis], pir\|\|S34197 DNA-binding protein RAP...	427.0	[0..2]	[246..207]
gi\|2827428 - gi\|2827428\|gb\|AAB99849.1\| Rap1p [Zygosaccharomyces rouxii]	301.0	[0..22]	[184..1]
gi\|49653907, gi\|... - gi\|50419429\|ref\|XP_458241.1\| hypothetical protein DEHA0C13959g [Debaryomyces hansenii CBS767], gi\|49...	290.0	[0..4]	[228..166]
gi\|2827426 - gi\|2827426\|gb\|AAB99848.1\| Rap1p [Saccharomyces unisporus]	282.0	[0..22]	[185..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GALPSHNKAS FTDEEDEFIL DVVRKNPTRR TTHTLYDEIS HYVPNHTGNS IRHRFRVYLS  60
   61 KRLEYVYEVD KFGKLVRDDD GNLIKTKVLP PSIKRKFSAD EDYTLAIAVK KQFYRDLFQI 120
  121 DPDTGRSLIT DEDTPTAIAR RNMTMDPNHV PGSEPNFAAY RTQSRRGPIA REFFKHFAEE 180
  181 HAAHTENAWR DRFRKFLLAY GIDDYISYYE AEKAQNREPE PMKNLTNRPK RPGVPTPGNY 240
  241 NSAAKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	125.0
Match:	1ignA
Description:	DNA-binding domain of rap1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits