YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|3318675, gi|1...
Organism: Escherichia coli
Length: 154 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3318675, gi|1....

Description E-value Query
Range
Subject
Range
gi|5353561 - gi|5353561|gb|AAD42179.1| superoxide dismutase/HCV major epitope fusion protein [synthetic construct...
193.0 [0..4] [153..1]
gi|194672519, gi... - gi|76632745|ref|XP_584414.2| PREDICTED: similar to Superoxide dismutase [Bos taurus], gi|194672519|r...
181.0 [0..4] [153..40]
gi|125586252, gi... - gi|125586252|gb|EAZ26916.1| hypothetical protein OsJ_10843 [Oryza sativa Japonica Group], gi|1087081...
178.0 [0..4] [153..118]
gi|74229679 - gi|74229679|gb|ABA00454.1| chloroplast Cu/ZnSOD [Gossypium hirsutum]
177.0 [0..6] [153..102]
gi|5689611 - gi|5689611|emb|CAB51840.1| copper/zinc superoxide dismutase [Arabidopsis thaliana]
174.0 [0..5] [153..64]
gi|218564 - gi|218564|dbj|BAA14373.1| unnamed protein product [Schizosaccharomyces pombe]
174.0 [0..5] [153..1]
gi|16798638 - gi|16798638|gb|AAL29462.1|AF434186_1 Cu-Zn-superoxide dismutase precursor [Pinus pinaster]
174.0 [0..4] [153..62]

Back

Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASEKVEMNLV TSQGVGQSIG SVTITETDKG LEFSPDLKAL PPGEHGFHIH AKGSCQPATK  60
   61 DGKASAAESA GGHLDPQNTG KHEGPEGAGH LGDLPALVVN NDGKATDAVI APRLKSLDEI 120
  121 KDKALMVHVG GDNMSDQPKP LGGGGERYAC GVIK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.522879
Match: 1esoA
Description: MONOMERIC CU,ZN SUPEROXIDE DISMUTASE FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
superoxide dismutase activity 6.56545216109493 bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor 6.56545216109493 bayes_pls_golite062009
protein phosphatase 2B binding 4.44871078041682 bayes_pls_golite062009
protein phosphatase binding 3.09771081708641 bayes_pls_golite062009
copper ion binding 3.08765741919005 bayes_pls_golite062009
phosphatase binding 2.92498687579153 bayes_pls_golite062009
chaperone binding 2.60320328321451 bayes_pls_golite062009
cation binding 1.47263821711963 bayes_pls_golite062009
metal ion binding 1.47263821711963 bayes_pls_golite062009
ion binding 1.46984161325946 bayes_pls_golite062009
superoxide dismutase copper chaperone activity 1.3654995562044 bayes_pls_golite062009
transition metal ion binding 1.26227437681754 bayes_pls_golite062009
catalytic activity 1.09233965765942 bayes_pls_golite062009
copper chaperone activity 0.72359630728145 bayes_pls_golite062009
binding 0.492284258521087 bayes_pls_golite062009
oxidoreductase activity 0.284691735291941 bayes_pls_golite062009
metallochaperone activity 0.00709120245375933 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle