YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157829638, gi...
Organism:	Homo sapiens
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157829638, gi....

Description	E-value	Query Range	Subject Range
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	193.0	[0..2]	[165..1152]
gi\|72397563, gi\|... - gi\|73670401\|ref\|YP_306416.1\| hypothetical protein Mbar_A2941 [Methanosarcina barkeri str. Fusaro], g...	184.0	[0..3]	[164..383]
gi\|40063048 - gi\|40063048\|gb\|AAR37904.1\| TPR domain protein [uncultured marine bacterium 560]	184.0	[0..2]	[165..98]
gi\|40063717 - gi\|40063717\|gb\|AAR38498.1\| TPR repeat protein [uncultured marine bacterium 583]	183.0	[0..2]	[165..100]
gi\|116066974, gi... - gi\|116075659\|ref\|ZP_01472918.1\| TPR repeat [Synechococcus sp. RS9916], gi\|116066974\|gb\|EAU72729.1\| T...	182.0	[0..3]	[165..89]
gi\|72002781, gi\|... - gi\|72382931\|ref\|YP_292286.1\| TPR repeat-containing protein [Prochlorococcus marinus str. NATL2A], gi...	181.0	[0..2]	[165..183]
gi\|46119331, gi\|... - gi\|67923599\|ref\|ZP_00517071.1\| TPR repeat:TPR repeat [Crocosphaera watsonii WH 8501], gi\|67854569\|gb...	176.0	[0..2]	[165..213]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDEPPADGAL KRAEELKTQA NDYFKAKDYE NAIKFYSQAI ELNPSNAIYY GNRSLAYLRT  60
   61 ECYGYALGDA TRAIELDKKY IKGYYRRAAS NMALGKFRAA LRDYETVVKV KPHDKDAKMK 120
  121 YQECNKIVKQ KAFERAIAGD EHKRSVVDSL DIESMTIEDE YSGPKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1wao1
Description:	PP5 structure
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.71974493738804	bayes_pls_golite062009
protein binding	2.67835748923436	bayes_pls_golite062009
transcription regulator activity	0.584434683111562	bayes_pls_golite062009
signal transducer activity	0.521231731916781	bayes_pls_golite062009
molecular transducer activity	0.521231731916781	bayes_pls_golite062009
DNA binding	0.31557320489611	bayes_pls_golite062009
nucleic acid binding	0.29339620716015	bayes_pls_golite062009
protein phosphatase binding	0.15630746178007	bayes_pls_golite062009
phosphatase binding	0.0815080609207302	bayes_pls_golite062009
transcription activator activity	0.0417103037919364	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: