YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21748606
Organism:	Homo sapiens
Length:	791 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21748606.

Description	E-value	Query Range	Subject Range
gi\|109114143, gi... - gi\|109114143\|ref\|XP_001087204.1\| PREDICTED: nuclear factor (erythroid-derived 2)-like 1 isoform 13 [...	0.0	[20..791]	[1..772]
gi\|114666372 - gi\|114666372\|ref\|XP_001173202.1\| PREDICTED: nuclear factor (erythroid-derived 2)-like 1 isoform 4 [P... NFE2L1 - nuclear factor (erythroid-derived 2)-like 1 gi\|168272888 - gi\|168272888\|dbj\|BAG10283.1\| nuclear factor erythroid 2-related factor 1 [synthetic construct]	0.0	[20..791]	[1..772]
gi\|55729299 - gi\|55729299\|emb\|CAH91385.1\| hypothetical protein [Pongo abelii] NF2L1_PONAB - Nuclear factor erythroid 2-related factor 1 OS=Pongo abelii GN=NFE2L1 PE=2 SV=1	0.0	[20..791]	[1..772]
gi\|73966220, gi\|... - gi\|73966220\|ref\|XP_537663.2\| PREDICTED: similar to Nuclear factor erythroid 2 related factor 1 (NF-E...	1.0E-98	[20..791]	[1..781]
gi\|47847522 - gi\|47847522\|dbj\|BAD21433.1\| mFLJ00380 protein [Mus musculus]	4.0E-98	[5..791]	[12..767]
gi\|542952, gi\|14... - pir\|\|A49672 transcription factor Nrf1 - human, gi\|14714932\|gb\|AAH10623.1\| NFE2L1 protein [Homo sapie... gi\|123995137, gi... - gi\|123995137\|gb\|ABM85170.1\| nuclear factor (erythroid-derived 2)-like 1 [synthetic construct], gi\|12... gi\|114666378, gi... - gi\|114666378\|ref\|XP_001173218.1\| PREDICTED: nuclear factor (erythroid-derived 2)-like 1 isoform 6 [P...	9.0E-97	[20..791]	[1..742]
NF2L1_CHICK - Nuclear factor erythroid 2-related factor 1 OS=Gallus gallus GN=NFE2L1 PE=2 SV=1	8.0E-94	[20..791]	[1..772]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVFWKILKTK KHKHSGPSAM LSLKKYLTEG LLQFTILLSL IGVRVDVDTY LTSQLPPLRE  60
   61 IILGPSSAYT QTQFHNLRNT LDGYGIHPKS IDLDNYFTAR RLLSQVRALD RFQVPTTEVN 120
  121 AWLVHRDPEG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [131-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVSGSQPNSG LALESSSGLQ DVTGPDNGVR ESETEQGFGE DLEDLGAVAP PVSGDLTKED  60
   61 IDLIDILWRQ DIDLGAGREV FDYSHRQKEQ DVEKELRDGG EQDTWAGEGA EALARNLLVD 120
  121 GETGESFPAQ VPSGEDQTAL SLEECLRLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [280-440]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EATCPFGENA EFPADISSIT EAVPSESEPP ALQNNLLSPL LTGTESPFDL EQQWQDLMSI  60
   61 MEMQAMEVNT SASEILYSAP PGDPLSTNYS LAPNTPINQN VSLHQASLGG CSQDFLLFSP 120
  121 EVESLPVASS STLLPLAPSN STSLNSTFGS TNLTGLFFPP Q

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [441-646]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNGTANDTAG PELPDPLGGL LDEAMLDEIS LMDLAIEEGF NPVQASQLEE EFDSDSGLSL  60
   61 DSSHSPSSLS SSEGSSSSSS SSSSSSSSAS SSASSSFSEE GAVGYSSDSE TLDLEEAEGA 120
  121 VGYQPEYSKF CRMSYQDPAQ LSCLPYLEHV GHNHTYNMAP SALDSADLPP PSALKKGSKE 180
  181 KQADFLDKQM SRDEHRARAM KIPFTN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [647-791]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKIINLPVEE FNELLSKYQL SEAQLSLIRD IRRRGKNKMA AQNCRKRKLD TILNLERDVE  60
   61 DLQRDKARLL REKVEFLRSL RQMKQKVQSL YQEVFGRLRD ENGRPYSPSQ YALQYAGDGS 120
  121 VLLIPRTMAD QQARRQERKP KDRRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.39794
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits