| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.75663989091] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| protein phosphatase type 1 complex | 2.224E-3 | 2 | 7 | 1 | 6292 |
| protein serine/threonine phosphatase complex | 5.3968E-3 | 2 | 17 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cellular carbohydrate metabolic process | 1.7276E-3 | 2 | 262 | 2 | 6292 |
| trehalose biosynthetic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| glycoside biosynthetic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| disaccharide biosynthetic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| carbohydrate metabolic process | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| trehalose metabolic process | 2.859E-3 | 2 | 9 | 1 | 6292 |
| glycoside metabolic process | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| disaccharide metabolic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| oligosaccharide biosynthetic process | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| oligosaccharide metabolic process | 8.8811E-3 | 2 | 28 | 1 | 6292 |
| protein amino acid dephosphorylation | 8.8811E-3 | 2 | 28 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| trehalose-phosphatase activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| enzyme regulator activity | 1.0773E-3 | 2 | 207 | 2 | 6292 |
| carbohydrate phosphatase activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| UDP-glucosyltransferase activity | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| glucosyltransferase activity | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| phosphatase regulator activity | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| protein phosphatase regulator activity | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| UDP-glycosyltransferase activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |