| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.766871283397] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cytoskeletal part | 1.0156E-3 | 2 | 201 | 2 | 6292 |
| cytoskeleton | 1.1732E-3 | 2 | 216 | 2 | 6292 |
| RENT complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| chromatin silencing complex | 2.859E-3 | 2 | 9 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| dephosphorylation | 3.9411E-5 | 2 | 40 | 2 | 6292 |
| phosphorus metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
| phosphate metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
| phosphoinositide dephosphorylation | 2.224E-3 | 2 | 7 | 1 | 6292 |
| phospholipid dephosphorylation | 2.224E-3 | 2 | 7 | 1 | 6292 |
| phosphoinositide-mediated signaling | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| inositol lipid-mediated signaling | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| lipid modification | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| regulation of exit from mitosis | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| exit from mitosis | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| protein amino acid dephosphorylation | 8.8811E-3 | 2 | 28 | 1 | 6292 |
| second-messenger-mediated signaling | 9.5139E-3 | 2 | 30 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| phosphatase activity | 1.8902E-4 | 2 | 87 | 2 | 6292 |
| phosphoric ester hydrolase activity | 2.6026E-4 | 2 | 102 | 2 | 6292 |
| inositol-polyphosphate 5-phosphatase activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| inositol trisphosphate phosphatase activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| phosphoinositide 5-phosphatase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| phosphatidylinositol bisphosphate phosphatase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| inositol or phosphatidylinositol phosphatase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| hydrolase activity, acting on ester bonds | 2.929E-3 | 2 | 341 | 2 | 6292 |