| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.804448740831] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| extrinsic to membrane | 6.4422E-5 | 2 | 51 | 2 | 6292 |
| extrinsic to vacuolar membrane | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| HOPS complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| extrinsic to organelle membrane | 3.811E-3 | 2 | 12 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| vacuole organization | 5.2295E-5 | 2 | 46 | 2 | 6292 |
| post-Golgi vesicle-mediated transport | 1.151E-4 | 2 | 68 | 2 | 6292 |
| vacuolar transport | 3.312E-4 | 2 | 115 | 2 | 6292 |
| Golgi vesicle transport | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| Golgi to endosome transport | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| vesicle docking during exocytosis | 3.811E-3 | 2 | 12 | 1 | 6292 |
| membrane docking | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| vesicle docking | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| late endosome to vacuole transport | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| Golgi to vacuole transport | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| vacuole fusion, non-autophagic | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |