| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.819057642535] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| coated vesicle | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| cytoplasmic vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| cytoplasmic membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| vesicle | 3.0291E-4 | 2 | 110 | 2 | 6292 |
| ER-Golgi intermediate compartment | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| COPI coated vesicle membrane | 2.859E-3 | 2 | 9 | 1 | 6292 |
| COPI vesicle coat | 2.859E-3 | 2 | 9 | 1 | 6292 |
| Golgi-associated vesicle membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| COPI-coated vesicle | 6.6645E-3 | 2 | 21 | 1 | 6292 |
| clathrin-coated vesicle | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ER to Golgi vesicle-mediated transport | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| Golgi transport vesicle coating | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| COPI coating of Golgi vesicle | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| vesicle targeting, to, from or within Golgi | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| Golgi vesicle budding | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| establishment of vesicle localization | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| vesicle targeting | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| Golgi vesicle transport | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| vesicle localization | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| vesicle coating | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| membrane budding | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| intra-Golgi vesicle-mediated transport | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| retrograde vesicle-mediated transport, Golgi to ER | 8.248E-3 | 2 | 26 | 1 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ARF GTPase activator activity | 3.0316E-7 | 2 | 4 | 2 | 6292 |
| GTPase activator activity | 2.5061E-5 | 2 | 32 | 2 | 6292 |
| small GTPase regulator activity | 8.6451E-5 | 2 | 59 | 2 | 6292 |
| enzyme activator activity | 1.1171E-4 | 2 | 67 | 2 | 6292 |
| GTPase regulator activity | 1.7614E-4 | 2 | 84 | 2 | 6292 |
| nucleoside-triphosphatase regulator activity | 2.256E-4 | 2 | 95 | 2 | 6292 |
| enzyme regulator activity | 1.0773E-3 | 2 | 207 | 2 | 6292 |