| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.875279739976] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| LCB1 |
|
|
|
| PIS1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| microsome | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| vesicular fraction | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| membrane fraction | 2.0691E-4 | 2 | 91 | 2 | 6292 |
| insoluble fraction | 2.0691E-4 | 2 | 91 | 2 | 6292 |
| cell fraction | 4.1715E-4 | 2 | 129 | 2 | 6292 |
| serine C-palmitoyltransferase complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| palmitoyltransferase complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| phosphatidylinositol biosynthetic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| lipid biosynthetic process | 4.2367E-4 | 2 | 130 | 2 | 6292 |
| phosphatidylinositol metabolic process | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| cellular lipid metabolic process | 8.5067E-4 | 2 | 184 | 2 | 6292 |
| lipid metabolic process | 1.4491E-3 | 2 | 240 | 2 | 6292 |
| sphingolipid biosynthetic process | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| membrane lipid biosynthetic process | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| phosphoinositide biosynthetic process | 9.1975E-3 | 2 | 29 | 1 | 6292 |
| sphingolipid metabolic process | 9.5139E-3 | 2 | 30 | 1 | 6292 |
| membrane lipid metabolic process | 9.5139E-3 | 2 | 30 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| serine C-palmitoyltransferase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| C-palmitoyltransferase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| C-acyltransferase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| CDP-alcohol phosphatidyltransferase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| palmitoyltransferase activity | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| phosphotransferase activity, for other substituted phosphate groups | 6.0308E-3 | 2 | 19 | 1 | 6292 |