| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.916486659178] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| ARP2 |
|
|
|
| SLA2 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| actin cytoskeleton | 1.8038E-4 | 2 | 85 | 2 | 6292 |
| cytoskeletal part | 1.0156E-3 | 2 | 201 | 2 | 6292 |
| cytoskeleton | 1.1732E-3 | 2 | 216 | 2 | 6292 |
| Arp2/3 protein complex | 2.224E-3 | 2 | 7 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| actin filament organization | 1.151E-4 | 2 | 68 | 2 | 6292 |
| actin cytoskeleton organization | 3.1973E-4 | 2 | 113 | 2 | 6292 |
| actin filament-based process | 3.4287E-4 | 2 | 117 | 2 | 6292 |
| cytoskeleton organization | 1.3422E-3 | 2 | 231 | 2 | 6292 |
| mitochondrion inheritance | 9.1975E-3 | 2 | 29 | 1 | 6292 |
| mitochondrion distribution | 9.1975E-3 | 2 | 29 | 1 | 6292 |
| mitochondrion localization | 9.5139E-3 | 2 | 30 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein binding, bridging | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| actin binding | 6.6645E-3 | 2 | 21 | 1 | 6292 |
| ATP binding | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| adenyl ribonucleotide binding | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |
| adenyl nucleotide binding | 9.5139E-3 | 2 | 30 | 1 | 6292 |
| purine nucleoside binding | 9.8303E-3 | 2 | 31 | 1 | 6292 |