| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.960438699257] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| GNT1 |
|
|
|
| HOC1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Golgi stack | 6.0632E-6 | 2 | 16 | 2 | 6292 |
| Golgi cisterna | 6.0632E-6 | 2 | 16 | 2 | 6292 |
| organelle subcompartment | 6.0632E-6 | 2 | 16 | 2 | 6292 |
| Golgi medial cisterna | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
| alpha-1,6-mannosyltransferase complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| mannosyltransferase complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| Golgi cis cisterna | 3.1764E-3 | 2 | 10 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| glycoprotein biosynthetic process | 1.6371E-4 | 2 | 81 | 2 | 6292 |
| glycoprotein metabolic process | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| substituted mannan metabolic process | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| mannan metabolic process | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| hemicellulose metabolic process | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| cellular carbohydrate metabolic process | 1.7276E-3 | 2 | 262 | 2 | 6292 |
| carbohydrate metabolic process | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| cell wall polysaccharide metabolic process | 3.811E-3 | 2 | 12 | 1 | 6292 |
| mannoprotein biosynthetic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| mannoprotein metabolic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| cell wall glycoprotein biosynthetic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| cell wall mannoprotein biosynthetic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| cell wall macromolecule biosynthetic process | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| cellular component macromolecule biosynthetic process | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| cellular cell wall macromolecule metabolic process | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| cell wall macromolecule metabolic process | 7.6148E-3 | 2 | 24 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transferase activity, transferring hexosyl groups | 1.5966E-4 | 2 | 80 | 2 | 6292 |
| transferase activity, transferring glycosyl groups | 2.7062E-4 | 2 | 104 | 2 | 6292 |
| acetylglucosaminyltransferase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| alpha-1,6-mannosyltransferase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| UDP-glycosyltransferase activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |