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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.965348016946]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
ARN1
  • endosome
  • cytoplasmic membrane-bounded vesicle
    		•
  • siderophore-iron transport
    		•
  • siderophore-iron transmembrane transporter activity
    		•
    ENB1
  • endosome
  • integral to membrane
  • cytoplasmic membrane-bounded vesicle
    		•
  • ferric-enterobactin transport
    		•
  • ferric-enterobactin transmembrane transporter activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    endosome 2.2085E-4 2 94 2 6292
    membrane-bounded vesicle 2.8654E-4 2 107 2 6292
    cytoplasmic vesicle 2.8654E-4 2 107 2 6292
    cytoplasmic membrane-bounded vesicle 2.8654E-4 2 107 2 6292
    vesicle 3.0291E-4 2 110 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    siderophore-iron transport 7.579E-7 2 6 2 6292
    iron assimilation by chelation and transport 7.579E-7 2 6 2 6292
    iron assimilation 7.579E-7 2 6 2 6292
    iron chelate transport 7.579E-7 2 6 2 6292
    siderophore transport 1.819E-6 2 9 2 6292
    iron ion transport 7.7306E-6 2 18 2 6292
    di-, tri-valent inorganic cation transport 2.5061E-5 2 32 2 6292
    iron ion homeostasis 3.552E-5 2 38 2 6292
    cellular iron ion homeostasis 3.552E-5 2 38 2 6292
    transition metal ion transport 4.5626E-5 2 43 2 6292
    metal ion transport 8.3521E-5 2 58 2 6292
    cellular di-, tri-valent inorganic cation homeostasis 1.0838E-4 2 66 2 6292
    di-, tri-valent inorganic cation homeostasis 1.0838E-4 2 66 2 6292
    cation transport 2.256E-4 2 95 2 6292
    cellular cation homeostasis 2.7588E-4 2 105 2 6292
    cation homeostasis 2.974E-4 2 109 2 6292
    enterobactin transport 3.1786E-4 2 1 1 6292
    ferric-enterobactin transport 3.1786E-4 2 1 1 6292
    ferric iron transport 3.1786E-4 2 1 1 6292
    cellular chemical homeostasis 3.5475E-4 2 119 2 6292
    cellular ion homeostasis 3.5475E-4 2 119 2 6292
    ion transport 3.6076E-4 2 120 2 6292
    cellular homeostasis 3.6076E-4 2 120 2 6292
    chemical homeostasis 3.791E-4 2 123 2 6292
    ion homeostasis 3.791E-4 2 123 2 6292
    homeostatic process 4.1951E-3 2 408 2 6292
    regulation of biological quality 7.6561E-3 2 551 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    siderophore-iron transmembrane transporter activity 3.0316E-7 2 4 2 6292
    siderophore transporter activity 3.0316E-7 2 4 2 6292
    iron ion transmembrane transporter activity 3.3348E-6 2 12 2 6292
    transition metal ion transmembrane transporter activity 1.9099E-5 2 28 2 6292
    di-, tri-valent inorganic cation transmembrane transporter activity 3.0063E-5 2 35 2 6292
    metal ion transmembrane transporter activity 5.2295E-5 2 46 2 6292
    inorganic cation transmembrane transporter activity 2.5516E-4 2 101 2 6292
    ferric-enterobactin transmembrane transporter activity 3.1786E-4 2 1 1 6292
    cation transmembrane transporter activity 3.4879E-4 2 118 2 6292
    ion transmembrane transporter activity 5.3483E-4 2 146 2 6292
    substrate-specific transmembrane transporter activity 1.7943E-3 2 267 2 6292
    transmembrane transporter activity 2.3578E-3 2 306 2 6292
    substrate-specific transporter activity 2.8436E-3 2 336 2 6292
    transporter activity 4.1132E-3 2 404 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle