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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.969641892247]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

actin cortical patch 4.1432E-5 2 41 2 6292
cortical actin cytoskeleton 6.6999E-5 2 52 2 6292
cortical cytoskeleton 6.6999E-5 2 52 2 6292
actin cytoskeleton 1.8038E-4 2 85 2 6292
cell cortex part 2.304E-4 2 96 2 6292
cell cortex 2.974E-4 2 109 2 6292
cytoskeletal part 1.0156E-3 2 201 2 6292
cytoskeleton 1.1732E-3 2 216 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

regulation of endocytosis 1.5158E-7 2 3 2 6292
regulation of vesicle-mediated transport 7.579E-7 2 6 2 6292
regulation of transport 2.779E-6 2 11 2 6292
regulation of localization 2.779E-6 2 11 2 6292
actin cortical patch assembly 4.5979E-6 2 14 2 6292
cortical actin cytoskeleton organization 5.3053E-6 2 15 2 6292
cortical cytoskeleton organization 5.3053E-6 2 15 2 6292
actin filament organization 1.151E-4 2 68 2 6292
regulation of cellular component organization 1.4021E-4 2 75 2 6292
endocytosis 1.9342E-4 2 88 2 6292
membrane invagination 2.2085E-4 2 94 2 6292
protein amino acid phosphorylation 2.6542E-4 2 103 2 6292
cytokinesis 3.1407E-4 2 112 2 6292
actin cytoskeleton organization 3.1973E-4 2 113 2 6292
actin filament-based process 3.4287E-4 2 117 2 6292
cell division 5.275E-4 2 145 2 6292
phosphorylation 8.0494E-4 2 179 2 6292
membrane organization 9.8542E-4 2 198 2 6292
cellular membrane organization 9.8542E-4 2 198 2 6292
phosphorus metabolic process 1.3191E-3 2 229 2 6292
phosphate metabolic process 1.3191E-3 2 229 2 6292
cytoskeleton organization 1.3422E-3 2 231 2 6292
vesicle-mediated transport 2.9119E-3 2 340 2 6292
post-translational protein modification 3.2108E-3 2 357 2 6292
cellular component assembly 3.7349E-3 2 385 2 6292
protein modification process 6.278E-3 2 499 2 6292
macromolecule modification 8.1649E-3 2 569 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein serine/threonine kinase activity 2.0691E-4 2 91 2 6292
protein kinase activity 6.1087E-4 2 156 2 6292
phosphotransferase activity, alcohol group as acceptor 9.8542E-4 2 198 2 6292
kinase activity 1.2395E-3 2 222 2 6292
transferase activity, transferring phosphorus-containing groups 4.4459E-3 2 420 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle