| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.00038471933] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| PTR3 |
|
|
|
| SSY5 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| extrinsic to plasma membrane | 6.8716E-6 | 2 | 17 | 2 | 6292 |
| extrinsic to membrane | 6.4422E-5 | 2 | 51 | 2 | 6292 |
| plasma membrane part | 8.0641E-5 | 2 | 57 | 2 | 6292 |
| plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| response to amine stimulus | 3.0316E-7 | 2 | 4 | 2 | 6292 |
| response to amino acid stimulus | 3.0316E-7 | 2 | 4 | 2 | 6292 |
| response to endogenous stimulus | 3.0316E-7 | 2 | 4 | 2 | 6292 |
| response to organic nitrogen | 3.0316E-7 | 2 | 4 | 2 | 6292 |
| response to acid | 2.779E-6 | 2 | 11 | 2 | 6292 |
| response to organic substance | 4.7071E-4 | 2 | 137 | 2 | 6292 |
| response to chemical stimulus | 3.6769E-3 | 2 | 382 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| serine-type endopeptidase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| serine-type peptidase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| serine hydrolase activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |