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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.03614217699]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
AGA2
  • fungal-type cell wall
    		•
  • agglutination involved in conjugation with cellular fusion
    		•
  • cell adhesion molecule binding
    		•
    SAG1
  • fungal-type cell wall
    		•
  • agglutination involved in conjugation with cellular fusion
    		•
  • cell adhesion molecule binding
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    fungal-type cell wall 2.7588E-4 2 105 2 6292
    cell wall 2.8118E-4 2 106 2 6292
    external encapsulating structure 2.8118E-4 2 106 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    heterophilic cell-cell adhesion 3.0316E-7 2 4 2 6292
    agglutination involved in conjugation with cellular fusion 3.0316E-7 2 4 2 6292
    agglutination involved in conjugation 3.0316E-7 2 4 2 6292
    cell-cell adhesion 5.0527E-7 2 5 2 6292
    cell adhesion 1.4147E-6 2 8 2 6292
    biological adhesion 1.4147E-6 2 8 2 6292
    response to pheromone involved in conjugation with cellular fusion 1.44E-4 2 76 2 6292
    response to pheromone 2.3525E-4 2 97 2 6292
    cellular response to chemical stimulus 2.8654E-4 2 107 2 6292
    conjugation with cellular fusion 3.9158E-4 2 125 2 6292
    conjugation 3.979E-4 2 126 2 6292
    response to organic substance 4.7071E-4 2 137 2 6292
    multi-organism process 5.13E-4 2 143 2 6292
    reproductive cellular process 1.1194E-3 2 211 2 6292
    reproductive process 1.1301E-3 2 212 2 6292
    sexual reproduction 1.3656E-3 2 233 2 6292
    reproduction 2.7096E-3 2 328 2 6292
    cellular response to stimulus 3.6193E-3 2 379 2 6292
    response to chemical stimulus 3.6769E-3 2 382 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    cell adhesion molecule binding 1.5158E-7 2 3 2 6292
    protein binding 9.4468E-3 2 612 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle